View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_79 (Length: 217)

Name: NF15789_low_79
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_79
NF15789_low_79
[»] chr5 (10 HSPs)
chr5 (1-200)||(8938756-8938955)
chr5 (62-200)||(22903000-22903136)
chr5 (59-192)||(27083293-27083424)
chr5 (136-203)||(26348124-26348191)
chr5 (95-200)||(16621148-16621251)
chr5 (76-200)||(19993213-19993335)
chr5 (74-135)||(20025202-20025263)
chr5 (95-193)||(4477138-4477234)
chr5 (143-175)||(30827056-30827088)
chr5 (121-200)||(31202476-31202553)
[»] chr2 (11 HSPs)
chr2 (73-192)||(45714913-45715030)
chr2 (74-202)||(45258198-45258324)
chr2 (74-175)||(19919139-19919238)
chr2 (75-200)||(27846567-27846690)
chr2 (59-202)||(12168877-12169018)
chr2 (76-202)||(12127709-12127833)
chr2 (97-183)||(17671915-17671999)
chr2 (121-198)||(29710984-29711059)
chr2 (96-183)||(17626842-17626927)
chr2 (148-200)||(3586354-3586406)
chr2 (151-191)||(31013553-31013593)
[»] chr1 (12 HSPs)
chr1 (74-178)||(5459778-5459880)
chr1 (74-200)||(33101555-33101679)
chr1 (120-208)||(48637515-48637603)
chr1 (136-199)||(26977719-26977782)
chr1 (93-192)||(34273025-34273122)
chr1 (148-208)||(25408087-25408148)
chr1 (63-115)||(23280412-23280464)
chr1 (74-192)||(2141000-2141115)
chr1 (87-201)||(43344489-43344601)
chr1 (151-189)||(30732511-30732549)
chr1 (143-200)||(3590813-3590870)
chr1 (121-192)||(4601543-4601612)
[»] chr7 (13 HSPs)
chr7 (60-191)||(29373351-29373480)
chr7 (71-202)||(13159289-13159418)
chr7 (60-202)||(21161147-21161286)
chr7 (148-200)||(7486536-7486588)
chr7 (138-200)||(5925523-5925585)
chr7 (138-200)||(12644766-12644828)
chr7 (136-174)||(18773960-18773998)
chr7 (138-175)||(12265165-12265202)
chr7 (138-198)||(9135411-9135471)
chr7 (136-200)||(9573474-9573538)
chr7 (148-200)||(9867987-9868039)
chr7 (112-175)||(16987165-16987226)
chr7 (148-192)||(26762967-26763011)
[»] chr8 (11 HSPs)
chr8 (74-200)||(23269165-23269289)
chr8 (61-200)||(17927752-17927889)
chr8 (74-200)||(26916946-26917070)
chr8 (74-174)||(15057955-15058052)
chr8 (136-176)||(14666911-14666951)
chr8 (137-192)||(18322923-18322978)
chr8 (157-200)||(24677635-24677678)
chr8 (77-178)||(23497205-23497304)
chr8 (148-200)||(3459532-3459584)
chr8 (121-172)||(17319698-17319747)
chr8 (143-203)||(24576628-24576688)
[»] chr4 (11 HSPs)
chr4 (72-178)||(3981867-3981971)
chr4 (71-137)||(40979169-40979235)
chr4 (74-202)||(19809621-19809746)
chr4 (145-200)||(47253265-47253320)
chr4 (123-192)||(12683753-12683820)
chr4 (142-200)||(13171064-13171122)
chr4 (71-135)||(19818610-19818674)
chr4 (136-200)||(29157081-29157145)
chr4 (148-198)||(1723952-1724003)
chr4 (61-199)||(10981772-10981908)
chr4 (137-200)||(15514609-15514672)
[»] scaffold0205 (1 HSPs)
scaffold0205 (136-208)||(10954-11027)
[»] scaffold0505 (1 HSPs)
scaffold0505 (74-192)||(7804-7920)
[»] scaffold0103 (1 HSPs)
scaffold0103 (139-209)||(40778-40849)
[»] scaffold0022 (1 HSPs)
scaffold0022 (143-191)||(69281-69329)
[»] chr3 (5 HSPs)
chr3 (60-183)||(2311899-2312020)
chr3 (120-200)||(21649378-21649456)
chr3 (148-192)||(8122970-8123014)
chr3 (148-193)||(9007831-9007876)
chr3 (71-108)||(28715621-28715658)
[»] chr6 (9 HSPs)
chr6 (102-200)||(9292067-9292163)
chr6 (121-199)||(22497347-22497423)
chr6 (151-200)||(16343573-16343622)
chr6 (60-108)||(690016-690064)
chr6 (136-200)||(9277348-9277412)
chr6 (74-110)||(14080382-14080418)
chr6 (152-200)||(19730639-19730687)
chr6 (74-110)||(20148215-20148251)
chr6 (74-110)||(22184577-22184613)
[»] scaffold0174 (1 HSPs)
scaffold0174 (124-192)||(29332-29398)
[»] scaffold0140 (1 HSPs)
scaffold0140 (143-200)||(6284-6341)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 8938756 - 8938955
Alignment:
Q  1 atcttatgacattagataaactcaaacgagtcaatccaaacaggatcttaatgcttgttattgatctgttcgatgaggatggatgagaggcaatggtggc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  8938756 atcttatgacattagataaactcaaacgaatcaatccaaacaggatcttaatgtttgttattgatatgttcgatgaggatggatgagaggcaatggtggc 8938855  T
Q  101 ggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||||||||| ||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8938856 ggaaagtgctctggtacggtggcgatgagtctttgtgcggtagaacgaaaggtgcatgcaggcacgttaacactccaatgctctagtcagtattggaact 8938955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 22903000 - 22903136
Alignment:
Q  62 tgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcag 161  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||||   ||||| ||| ||||||| |||  ||||| |||| ||||||    | ||    
T  22903000 tgatctgtccgatgaggatggatgagaggcaacgttggcggaaagtgcttcagtacggtggtgatgagttttc--gcggtggaacgaaaggttttcgtag 22903097  T
Q  162 gcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||| ||||||||| ||| |||| |||||||| |||||||    
T  22903098 gcatgttagcacttcaacgctcaagtcagtaatggaact 22903136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 27083424 - 27083293
Alignment:
Q  59 tattgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatg 158  Q
    ||||||||||| || ||||||| |||||||  ||| |||||||||| ||||| |  |||  |||||| ||||||||  |||||||||| ||| |||  ||    
T  27083424 tattgatctgtccggtgaggattgatgagaaacaacggtggcggaatgtgctctattacagtggcgaagagtcttc--gcggtagaacgaaatgtgtctg 27083327  T
Q  159 caggcacgttagcactccaatgctctagtcagta 192  Q
    ||| ||||||||||||||||  ||| ||||||||    
T  27083326 cagacacgttagcactccaacactcaagtcagta 27083293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 26348191 - 26348124
Alignment:
Q  136 tgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaactaaa 203  Q
    |||||| |||| |||||||  |||||||||||||||||||||| |||| ||||| || ||||||||||    
T  26348191 tgcggtggaacgaaaggtgtctgcaggcacgttagcactccaacgctcaagtcattaatggaactaaa 26348124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 16621148 - 16621251
Alignment:
Q  95 ggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtatt 194  Q
    |||| |||||| |||| |||||| ||||||||||||||||   |||| |||| ||||||| ||| |||||||||| |||| ||| |||| || || ||||    
T  16621148 ggtgacggaaaatgctttggtacattggcgatgagtcttc--acggtggaacgaaaggtgtatgtaggcacgttaacacttcaacgctcaagccaatatt 16621245  T
Q  195 ggaact 200  Q
    ||||||    
T  16621246 ggaact 16621251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 19993335 - 19993213
Alignment:
Q  76 aggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactc 175  Q
    |||||||| ||||||||| ||||||||||||||||  ||||||  ||   |||||||||  ||||| | | ||||||| | ||||| ||| |||||| ||    
T  19993335 aggatggacgagaggcaacggtggcggaaagtgctccggtacggagggattgagtcttc--gcggtgggaaaaaaggttcttgcagacacattagcagtc 19993238  T
Q  176 caatgctctagtcagtattggaact 200  Q
    |||| ||| |||||||| |||||||    
T  19993237 caatactcaagtcagtaatggaact 19993213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 20025202 - 20025263
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcg 135  Q
    ||||||||||||||||||| | ||||||||| ||||| ||||||| || | |||||||||||    
T  20025202 tgaggatggatgagaggcactagtggcggaatgtgctttggtacggtgtcaatgagtcttcg 20025263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 4477138 - 4477234
Alignment:
Q  95 ggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtat 193  Q
    ||||| ||||||||||  |||||| ||||||||||||||  |||||| | || || |||||  ||||||||||||  ||||||| |||| |||||||||    
T  4477138 ggtggtggaaagtgctccggtacggtggcgatgagtctt--tgcggtgggacgaagggtgcccgcaggcacgttaatactccaacgctcaagtcagtat 4477234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 30827056 - 30827088
Alignment:
Q  143 gaacaaaaggtgcatgcaggcacgttagcactc 175  Q
    |||| ||||||||||||||||||||||||||||    
T  30827056 gaacgaaaggtgcatgcaggcacgttagcactc 30827088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 31202553 - 31202476
Alignment:
Q  121 ggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||||||||||||||  |||| ||||| || |||| | |||| ||||||||| ||| | |||| ||||||||||||||||    
T  31202553 ggcgatgagtcttcg--cggtggaacagaaagtgcctacaggaacgttagcattccgacgctcaagtcagtattggaact 31202476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 45714913 - 45715030
Alignment:
Q  73 atgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagca 172  Q
    ||||||||||||||| |||||   ||||||||||||||  ||||| |||||||||||||||| ||  || |||| |||||||||||||||||||||||||    
T  45714913 atgaggatggatgagtggcaacaatggcggaaagtgctccggtacattggcgatgagtcttcctg--gtggaacgaaaggtgcatgcaggcacgttagca 45715010  T
Q  173 ctccaatgctctagtcagta 192  Q
    |||||| |||| ||||||||    
T  45715011 ctccaacgctcaagtcagta 45715030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 45258324 - 45258198
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    |||||||||||||||||||| ||||  ||||| |||| || || | |||||||||||||||  ||||| |||| |||| ||  ||||||||||||| |||    
T  45258324 tgaggatggatgagaggcaacggtgatggaaaatgctttgatatggtggcgatgagtcttc--gcggtggaacgaaagatgtctgcaggcacgttaacac 45258227  T
Q  174 tccaatgctctagtcagtattggaactaa 202  Q
    ||||| |||| ||| |||| || ||||||    
T  45258226 tccaaagctcaagtaagtaatgaaactaa 45258198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 19919238 - 19919139
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    |||| |||||||||||||||||||||| |||||||||  |||| | ||||||| |||||||||  ||| |||| |||||||| |||||| || |||| ||    
T  19919238 tgagaatggatgagaggcaatggtggcagaaagtgctccggtatggtggcgatcagtcttcgt--ggtggaacgaaaggtgcctgcaggaacattagaac 19919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 27846690 - 27846567
Alignment:
Q  75 gaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcact 174  Q
    |||||||||||||||||||  ||| ||||| ||| |  |||||| |||| |||||||||||  | || | || ||| |||| ||||||||||||||||||    
T  27846690 gaggatggatgagaggcaacagtgacggaatgtgttccggtacggtggcaatgagtcttcg--cagttggacgaaaagtgcctgcaggcacgttagcact 27846593  T
Q  175 ccaatgctctagtcagtattggaact 200  Q
    |||| | || |||||||| |||||||    
T  27846592 ccaacgatcaagtcagtaatggaact 27846567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 12168877 - 12169018
Alignment:
Q  59 tattgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatg 158  Q
    ||||||| ||| || ||| ||||||||||||||||  |||||||||| ||||  |||||  ||||||| ||||||  |||||| |||| |||||||  ||    
T  12168877 tattgatatgtccggtgaagatggatgagaggcaacagtggcggaaaatgctccggtac-ctggcgataagtctt--tgcggtggaacgaaaggtgtctg 12168973  T
Q  159 caggcacgttagcactccaatgc-tctagtcagtattggaactaa 202  Q
    ||||||| ||| |||||||| || || |||||||| |||||||||    
T  12168974 caggcacattaacactccaacgcttcaagtcagtaatggaactaa 12169018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 12127833 - 12127709
Alignment:
Q  76 aggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactc 175  Q
    ||||| ||||||||||||   |||| |||| ||||  |||||| ||| |||| |||||||  |||| | || |||||| | |||||||||||||||||||    
T  12127833 aggatagatgagaggcaacattggcagaaaatgcttcggtacggtggtgatgggtcttcg--cggtgggacgaaaggtacctgcaggcacgttagcactc 12127736  T
Q  176 caatgctctagtcagtattggaactaa 202  Q
    ||| |||| |||||||| || ||||||    
T  12127735 caacgctcaagtcagtaatgaaactaa 12127709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 17671915 - 17671999
Alignment:
Q  97 tggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctc 183  Q
    |||||||||||||| ||||||  ||||||||||||||| |  ||| |||| |||||||  ||||| ||||||||| |||||||||||    
T  17671915 tggcggaaagtgctctggtacagtggcgatgagtcttcat--ggtggaacgaaaggtgtctgcagacacgttagcgctccaatgctc 17671999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 29710984 - 29711059
Alignment:
Q  121 ggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaa 198  Q
    ||||||| |||||||  |||| |||||||||||| ||||| ||||||||||||||||| |||| ||||| || |||||    
T  29710984 ggcgatgcgtcttcg--cggtggaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtcactaatggaa 29711059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 17626842 - 17626927
Alignment:
Q  96 gtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctc 183  Q
    ||||||||||||||| ||||||  ||||||||||||||  |  ||| |||| |||||||  ||||| ||||||||| |||||||||||    
T  17626842 gtggcggaaagtgctttggtacagtggcgatgagtctt--tatggtggaacgaaaggtgtctgcagacacgttagctctccaatgctc 17626927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 3586354 - 3586406
Alignment:
Q  148 aaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||||||||||| |||||||||| ||||| | |||| |||||||| |||||||    
T  3586354 aaaggtgcatgccggcacgttaggactccgacgctcaagtcagtaatggaact 3586406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 31013553 - 31013593
Alignment:
Q  151 ggtgcatgcaggcacgttagcactccaatgctctagtcagt 191  Q
    ||||| || |||||||||||||||||||||||| |||||||    
T  31013553 ggtgcttgtaggcacgttagcactccaatgctcaagtcagt 31013593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 5459880 - 5459778
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    |||||||||||||||||| | | |||||||| ||||| ||||||| |||||||||||||||||  ||| | || ||||||||||||||| ||||||||||    
T  5459880 tgaggatggatgagaggcgacgatggcggaatgtgctctggtacggtggcgatgagtcttcgt--ggtgggacgaaaggtgcatgcaggtacgttagcac 5459783  T
Q  174 tccaa 178  Q
    |||||    
T  5459782 tccaa 5459778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 33101679 - 33101555
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    ||||||||||||||||||||   |||||||||||| |  |||||  ||  ||||||||||||  | ||||||  ||||||||||||||||||||||||||    
T  33101679 tgaggatggatgagaggcaacactggcggaaagtgtttcggtacagtgttgatgagtcttcg--ctgtagaatgaaaggtgcatgcaggcacgttagcac 33101582  T
Q  174 tccaatgctctagtcagtattggaact 200  Q
    ||||| |||| |||| ||| |||||||    
T  33101581 tccaacgctcaagtcggtaatggaact 33101555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 48637515 - 48637603
Alignment:
Q  120 tggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact-aaagagag 208  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||  | |||| |||||||| ||||||| ||||||||    
T  48637515 tggcgatgagtcttc-tgcggtagaacgaaaggtgcctgcaggcacgtcagcactctgacgctcaagtcagtaatggaactgaaagagag 48637603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 26977719 - 26977782
Alignment:
Q  136 tgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaac 199  Q
    |||||| |||| |||||||| |||||||||||||||||||||| |||| |||||||| ||||||    
T  26977719 tgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaac 26977782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 34273025 - 34273122
Alignment:
Q  93 atggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagta 192  Q
    |||||||| ||||||| |  |||||| |||||| |||||||  |||||| | || |||||| | |||| |||||||||||||||||||||| ||||||||    
T  34273025 atggtggctgaaagtgtttcggtacggtggcgaggagtctt--tgcggtgggacgaaaggtacctgcaagcacgttagcactccaatgctcaagtcagta 34273122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 25408087 - 25408148
Alignment:
Q  148 aaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact-aaagagag 208  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||| || |||| ||||||||    
T  25408087 aaaggtgcctgcagacacgttagcactccaatgctcaagtcagtaatgaaactgaaagagag 25408148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 23280464 - 23280412
Alignment:
Q  63 gatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggt 115  Q
    |||||||||| |||||||| ||||| ||||| |||||||||||||||| ||||    
T  23280464 gatctgttcggtgaggatgaatgagtggcaacggtggcggaaagtgctctggt 23280412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 2141115 - 2141000
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    |||||||| |||| || |||||||| ||||| ||||| | || || | ||||||| |||||   ||||||||| ||||||| |||||||||  |||||||    
T  2141115 tgaggatgaatgaaagacaatggtgacggaatgtgctctagt-cggtagcgatgaatcttca--cggtagaacgaaaggtgtatgcaggcaacttagcac 2141019  T
Q  174 tccaatgctctagtcagta 192  Q
    ||||| |||| ||||||||    
T  2141018 tccaacgctcaagtcagta 2141000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 43344601 - 43344489
Alignment:
Q  87 gaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctag 186  Q
    ||||||||| | | |||||||| | ||||||| ||||||||||||||  |||||| | |  |||||||  |||||  |||||||||||| || |||| ||    
T  43344601 gaggcaatgatagtggaaagtgttctggtacggtggcgatgagtctt--tgcggtgggatgaaaggtgtctgcagaaacgttagcactcgaacgctcaag 43344504  T
Q  187 tcagtattggaacta 201  Q
    ||||||||| |||||    
T  43344503 tcagtattgaaacta 43344489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 30732511 - 30732549
Alignment:
Q  151 ggtgcatgcaggcacgttagcactccaatgctctagtca 189  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  30732511 ggtgcctgcaggcacgttagcactccaatgctcaagtca 30732549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 3590813 - 3590870
Alignment:
Q  143 gaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||| |||||||||||||||||| |||||||||| | | || |||||||| |||||||    
T  3590813 gaacgaaaggtgcatgcaggcaccttagcactccgacgatcaagtcagtaatggaact 3590870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 4601612 - 4601543
Alignment:
Q  121 ggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagta 192  Q
    |||||| ||||||||  |||| |||| |||||||  |||||||||||||||||||| | |||| ||||||||    
T  4601612 ggcgataagtcttcg--cggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtcagta 4601543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 29373351 - 29373480
Alignment:
Q  60 attgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgc 159  Q
    |||||||||| |  ||||||| ||||||||||||| |||| ||||| || | ||||||| ||| ||||||| ||  ||||||  ||| ||||||||||||    
T  29373351 attgatctgtccagtgaggatagatgagaggcaatagtggtggaaaatgttctggtacggtggtgatgagtttt--tgcggtgaaacgaaaggtgcatgc 29373448  T
Q  160 aggcacgttagcactccaatgctctagtcagt 191  Q
    ||||| ||||| |||||||||||| |||||||    
T  29373449 aggcatgttaggactccaatgctcaagtcagt 29373480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 13159289 - 13159418
Alignment:
Q  71 cgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttag 170  Q
    ||||||||||||||||||||||| |||||  |||  ||||   |||||  |||| ||||||||  |||||  | |||||| |||| |||||||||||||     
T  13159289 cgatgaggatggatgagaggcaacggtgggagaagatgctccagtacggcggcgttgagtctt--tgcggcgggacaaaatgtgcctgcaggcacgttaa 13159386  T
Q  171 cactccaatgctctagtcagtattggaactaa 202  Q
    ||||||||||||| | ||||||||||||||||    
T  13159387 cactccaatgctcaaatcagtattggaactaa 13159418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 21161147 - 21161286
Alignment:
Q  60 attgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgc 159  Q
    |||||||||| |  |||||||||||||||||||||| |||| |||  |||| ||| |||  |  ||||||||||||  |||| |||| |||| ||  |||    
T  21161147 attgatctgtccagtgaggatggatgagaggcaatgttggcagaatatgctctggaacggggaagatgagtcttcg--cggtggaacgaaag-tgtctgc 21161243  T
Q  160 aggcacgttagcactccaatgctctagtcagtattggaactaa 202  Q
    ||||||||||||||||||| |||| |||||||| |||| ||||    
T  21161244 aggcacgttagcactccaacgctcaagtcagtaatggagctaa 21161286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 7486536 - 7486588
Alignment:
Q  148 aaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||||||||||||||||||||||||||||| |||| | |||||| |||||||    
T  7486536 aaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaact 7486588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 5925585 - 5925523
Alignment:
Q  138 cggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||| |||| |||||||  |||||||||||||||||||||| | || |||||||| |||||||    
T  5925585 cggtggaacgaaaggtgtctgcaggcacgttagcactccaacgatcaagtcagtaatggaact 5925523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 12644766 - 12644828
Alignment:
Q  138 cggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||| |||| ||||||||||||||||| ||||||||||| | ||||  ||||||| |||||||    
T  12644766 cggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaact 12644828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 18773960 - 18773998
Alignment:
Q  136 tgcggtagaacaaaaggtgcatgcaggcacgttagcact 174  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  18773960 tgcggtggaacgaaaggtgcatgcaggcacgttagcact 18773998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 12265202 - 12265165
Alignment:
Q  138 cggtagaacaaaaggtgcatgcaggcacgttagcactc 175  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  12265202 cggtggaacaaaaggtgcatgcaggcacgttaacactc 12265165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 9135471 - 9135411
Alignment:
Q  138 cggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaa 198  Q
    |||| |||| ||||||||||  |||||||||||||||| || |||| |||||||| |||||    
T  9135471 cggtggaacgaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaa 9135411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 9573538 - 9573474
Alignment:
Q  136 tgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||||| ||||||  ||||| |||||||||||||||||||||| || | ||||| ||| ||||||    
T  9573538 tgcggtggaacaaggggtgcctgcaggcacgttagcactccaacgcacaagtcaatatgggaact 9573474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 9868039 - 9867987
Alignment:
Q  148 aaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||||||||||||| ||||||||||||  | |||| |||||||| |||||||    
T  9868039 aaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaact 9867987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 16987226 - 16987165
Alignment:
Q  112 tggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactc 175  Q
    |||||||  ||| |||||||||||  |||| |||| |||||||||||| |||||||||||||||    
T  16987226 tggtacggcggcaatgagtcttcg--cggtggaacgaaaggtgcatgcgggcacgttagcactc 16987165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 26763011 - 26762967
Alignment:
Q  148 aaaggtgcatgcaggcacgttagcactccaatgctctagtcagta 192  Q
    |||||| | |||||||||||||||||||||| |||| ||||||||    
T  26763011 aaaggttcttgcaggcacgttagcactccaacgctcaagtcagta 26762967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 23269165 - 23269289
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    |||| |||||| ||||||||| || ||||||| |||| ||||||| ||||||||||||||  |||||| |||| |||||||  | |||||| ||||||||    
T  23269165 tgagtatggataagaggcaatagttgcggaaaatgctctggtacggtggcgatgagtctt--tgcggtggaacgaaaggtgtctacaggcaagttagcac 23269262  T
Q  174 tccaatgctctagtcagtattggaact 200  Q
    |||||  ||  |||||||| |||||||    
T  23269263 tccaacacttaagtcagtaatggaact 23269289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 17927889 - 17927752
Alignment:
Q  61 ttgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgca 160  Q
    |||||||||  | ||||||||||| |||||||  | |||||||||||| | | ||| | ||||||||| |||| |||  || | || |||||||||||||    
T  17927889 ttgatctgtctggtgaggatggattagaggcagcgatggcggaaagtgttctagtatggtggcgatgactctttgtg--gtgggacgaaaggtgcatgca 17927792  T
Q  161 ggcacgttagcactccaatgctctagtcagtattggaact 200  Q
     ||||||||||||||||| |||  |||||||| |||||||    
T  17927791 tgcacgttagcactccaacgcttaagtcagtaatggaact 17927752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 26917070 - 26916946
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    |||||||||||||||||||| |||||| ||||| ||| | ||||  |||||| ||||||||||  | | |||| ||||||||||  |||||||||||| |    
T  26917070 tgaggatggatgagaggcaacggtggcagaaagggctctagtacagtggcgacgagtcttcgt--gatggaacgaaaggtgcatttaggcacgttagcgc 26916973  T
Q  174 tccaatgctctagtcagtattggaact 200  Q
     | || |||| |||||||| |||||||    
T  26916972 actaacgctcaagtcagtaatggaact 26916946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 15057955 - 15058052
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    ||||||||||||||||||||  ||| ||||||||| |   ||||| || ||||||||||| |||  || |||| ||||||||||||||||||||||||||    
T  15057955 tgaggatggatgagaggcaacagtgacggaaagtg-tccagtacggtgacgatgagtctttgtg--gtggaacgaaaggtgcatgcaggcacgttagcac 15058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 14666951 - 14666911
Alignment:
Q  136 tgcggtagaacaaaaggtgcatgcaggcacgttagcactcc 176  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  14666951 tgcggtggaacaaaaggtgcctgcaggcacgttagcactcc 14666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 18322923 - 18322978
Alignment:
Q  137 gcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagta 192  Q
    ||||| ||||||||||||||||||| || |||| |||||||| |||| ||||||||    
T  18322923 gcggtggaacaaaaggtgcatgcagacatgttaacactccaacgctcaagtcagta 18322978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 24677678 - 24677635
Alignment:
Q  157 tgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||    
T  24677678 tgcaagcatgttagcactccaatgctcaagtcagtattggaact 24677635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 23497304 - 23497205
Alignment:
Q  77 ggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactcc 176  Q
    |||||||||||||||||  |||||||||| | ||  |||||| ||||||||||||||  ||| || |||| ||||||   |||| ||| |||||||||||    
T  23497304 ggatggatgagaggcaacagtggcggaaaatactcaggtacggtggcgatgagtctt--tgcagtggaacgaaaggtatctgcacgcatgttagcactcc 23497207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 3459584 - 3459532
Alignment:
Q  148 aaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||||||| ||||||||||||||||||||   |||| |||||||| |||||||    
T  3459584 aaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaact 3459532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 17319747 - 17319698
Alignment:
Q  121 ggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagca 172  Q
    |||||||||||||||||  || |||| ||||||||||||||||| |||||||    
T  17319747 ggcgatgagtcttcgtg--gtggaacgaaaggtgcatgcaggcatgttagca 17319698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 24576688 - 24576628
Alignment:
Q  143 gaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaactaaa 203  Q
    |||| |||||||| ||||||||||||| |||||  | |||| |||||||| ||||||||||    
T  24576688 gaacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaa 24576628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 3981867 - 3981971
Alignment:
Q  72 gatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagc 171  Q
    |||||||||||||||||||||| ||||||||||| || |  |||||  ||  |||||||||||   |||| |||| ||||||||||||| ||||||||||    
T  3981867 gatgaggatggatgagaggcaacggtggcggaaaatgttccggtacagtgaggatgagtcttc--acggtggaacgaaaggtgcatgcatgcacgttagc 3981964  T
Q  172 actccaa 178  Q
    |||||||    
T  3981965 actccaa 3981971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 40979235 - 40979169
Alignment:
Q  71 cgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtg 137  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||| | ||| ||||||||| ||||    
T  40979235 cgatgaggatggatgagaggcaatggtagtggaaagtgctctggtatggtggtgatgagtctccgtg 40979169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 19809621 - 19809746
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    ||||||||||| | |||||| ||||| |||| ||||| ||||||| || ||||||||||||  ||||| | || |||||| | ||||| || ||||||||    
T  19809621 tgaggatggataaaaggcaacggtggtggaatgtgctctggtacggtgacgatgagtcttc--gcggttg-acgaaaggttcctgcagacatgttagcac 19809717  T
Q  174 tccaatgctctagtcagtattggaactaa 202  Q
    ||||| |||| |||||||| || ||||||    
T  19809718 tccaacgctcaagtcagtaatgaaactaa 19809746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 47253265 - 47253320
Alignment:
Q  145 acaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||||||||| |||||||| ||||||||||||| |||| |||||||| |||||||    
T  47253265 acaaaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaact 47253320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 12683753 - 12683820
Alignment:
Q  123 cgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagta 192  Q
    |||||||||||  |||||| |||| |||||||| |||||||||||||||||||||| |||| ||| ||||    
T  12683753 cgatgagtctt--tgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagta 12683820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 13171064 - 13171122
Alignment:
Q  142 agaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||| |||||||| ||||||||||||||||||||||  ||| |||||||| |||||||    
T  13171064 agaacgaaaggtgcttgcaggcacgttagcactccaactctcaagtcagtaatggaact 13171122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 19818610 - 19818674
Alignment:
Q  71 cgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcg 135  Q
    |||||||||||||| | |||||| ||||| |||| ||||| ||||||| || |||||||||||||    
T  19818610 cgatgaggatggataaaaggcaacggtggtggaatgtgctctggtacggtgacgatgagtcttcg 19818674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 29157081 - 29157145
Alignment:
Q  136 tgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||||| |||| |||||||||||||| |||||| ||||||||| |||| ||| |||| |||||||    
T  29157081 tgcggtggaacgaaaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaact 29157145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 1723952 - 1724003
Alignment:
Q  148 aaaggtgcatgcaggca-cgttagcactccaatgctctagtcagtattggaa 198  Q
    |||||||||||||| || ||||||||||||||||||| ||||||||| ||||    
T  1723952 aaaggtgcatgcagacaacgttagcactccaatgctcaagtcagtataggaa 1724003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 10981772 - 10981908
Alignment:
Q  61 ttgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgca 160  Q
    ||||||||| |||||||||||||||||||||||   ||| |||| |||||   ||||| ||  |||||||||||  || || | || |||||||| ||||    
T  10981772 ttgatctgtccgatgaggatggatgagaggcaacaatggtggaatgtgctccagtacggtgatgatgagtcttc--gcagtgggacgaaaggtgcctgca 10981869  T
Q  161 ggcacgttagcactccaatgctctagtcagtattggaac 199  Q
    |  ||||| |||||||||  ||| |||||||| ||||||    
T  10981870 gcaacgttggcactccaacactcaagtcagtaatggaac 10981908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 15514672 - 15514609
Alignment:
Q  137 gcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||| |||| || ||||| || ||||||||||||||||||| |||| |||||||| |||||||    
T  15514672 gcggtggaacgaagggtgcctgtaggcacgttagcactccaacgctcaagtcagtaatggaact 15514609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 11027 - 10954
Alignment:
Q  136 tgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact-aaagagag 208  Q
    |||||| |||||||||||| ||||||||||||||||||||||| |||| ||||| || ||||||| ||||||||    
T  11027 tgcggtggaacaaaaggtgtatgcaggcacgttagcactccaacgctcaagtcaataatggaactgaaagagag 10954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 7804 - 7920
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcac 173  Q
    ||||||||||||||||||||  |||||| ||||| || |  |||| |||||||||||||||   |||| |||  ||||||||||| ||||||||||||||    
T  7804 tgaggatggatgagaggcaaaagtggcgaaaagtactctattacggtggcgatgagtcttc--acggtggaaggaaaggtgcatgtaggcacgttagcac 7901  T
Q  174 tccaatgctctagtcagta 192  Q
    || || |||| | ||||||    
T  7902 tctaacgctcaaatcagta 7920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 40778 - 40849
Alignment:
Q  139 ggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact-aaagagaga 209  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||| |||||||  ||||||| |||||||||    
T  40778 ggtagaacgaaaggcgcatgcaggcacgttagcactccaacgctcaagtcagtgatggaactgaaagagaga 40849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 69329 - 69281
Alignment:
Q  143 gaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagt 191  Q
    ||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  69329 gaacaaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagt 69281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 2312020 - 2311899
Alignment:
Q  60 attgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgc 159  Q
    |||||| ||| || |||| |||||||||||||||  |||||| ||||||||  |||||| |||||| ||||||||||  ||| |||  |||||||  |||    
T  2312020 attgatatgtccggtgagtatggatgagaggcaacagtggcgcaaagtgctccggtacggtggcgaagagtcttcgt--ggtggaatgaaaggtgtctgc 2311923  T
Q  160 aggcacgttagcactccaatgctc 183  Q
    ||  ||||||||||||||| ||||    
T  2311922 agatacgttagcactccaacgctc 2311899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 21649378 - 21649456
Alignment:
Q  120 tggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||||||||||||||  |||| |||| |||||||| |||| |||||||||||| |||| | || |||||||| |||||||    
T  21649378 tggcgatgagtcttcg--cggtggaacgaaaggtgcctgcaagcacgttagcaccccaacgatcaagtcagtaatggaact 21649456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 8123014 - 8122970
Alignment:
Q  148 aaaggtgcatgcaggcacgttagcactccaatgctctagtcagta 192  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||||    
T  8123014 aaaggtgtatgcaggcacgttagcactccaacgctcaagtcagta 8122970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 9007876 - 9007831
Alignment:
Q  148 aaaggtgcatgcaggcacgttagcactccaatgctctagtcagtat 193  Q
    |||||||| ||||||||||||| |||||||| |||| |||||||||    
T  9007876 aaaggtgcctgcaggcacgttaacactccaacgctcaagtcagtat 9007831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 28715658 - 28715621
Alignment:
Q  71 cgatgaggatggatgagaggcaatggtggcggaaagtg 108  Q
    |||||||||||||||||||||||  |||||||||||||    
T  28715658 cgatgaggatggatgagaggcaaaagtggcggaaagtg 28715621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 9292163 - 9292067
Alignment:
Q  102 gaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||||||| || |||| ||| || |||||||  | |||| |||| |||||||| |||| |||||||||||| | || |||| ||||||||||||||||    
T  9292163 gaaagtgctctgctacggtggtgaggagtctt--tacggtggaacgaaaggtgcctgcaagcacgttagcacgctaacgctcaagtcagtattggaact 9292067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 22497423 - 22497347
Alignment:
Q  121 ggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaac 199  Q
    |||||||||||||||  || | |||| |||||||| ||||| |||||||||||||| | |||| |||||||| ||||||    
T  22497423 ggcgatgagtcttcg--cgatggaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatggaac 22497347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 16343573 - 16343622
Alignment:
Q  151 ggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||| ||||||||||||||||||||||  ||| |||||||| |||||||    
T  16343573 ggtgcctgcaggcacgttagcactccaacactcaagtcagtaatggaact 16343622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 690064 - 690016
Alignment:
Q  60 attgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtg 108  Q
    ||||||||||||| |||||||||||||| || ||||||||  |||||||    
T  690064 attgatctgttcggtgaggatggatgagtggtaatggtggtagaaagtg 690016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 9277412 - 9277348
Alignment:
Q  136 tgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    |||||| |||| |||||| | ||||| ||||||||||||  || |||| ||||||||||||||||    
T  9277412 tgcggtggaacgaaaggttcctgcagacacgttagcactataacgctcaagtcagtattggaact 9277348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 14080382 - 14080418
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgct 110  Q
    |||||||||||||| | ||||||||||||||||||||    
T  14080382 tgaggatggatgagtgacaatggtggcggaaagtgct 14080418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 19730687 - 19730639
Alignment:
Q  152 gtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||||||||||| ||||||||||||| |||| ||||| || |||||||    
T  19730687 gtgcatgcaggcatgttagcactccaacgctcaagtcaataatggaact 19730639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 20148215 - 20148251
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgct 110  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  20148215 tgaggatggatgagtggcaatgatggcggaaagtgct 20148251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 22184613 - 22184577
Alignment:
Q  74 tgaggatggatgagaggcaatggtggcggaaagtgct 110  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  22184613 tgaggatggatgagtggcaatgatggcggaaagtgct 22184577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 29398 - 29332
Alignment:
Q  124 gatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagta 192  Q
    ||||||||||||  |||| |||| ||||||||||| || || ||||||||||||| |||| ||||||||    
T  29398 gatgagtcttcg--cggtggaacgaaaggtgcatggagtcatgttagcactccaacgctcaagtcagta 29332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 6284 - 6341
Alignment:
Q  143 gaacaaaaggtgcatgcaggcacgttagcactccaatgctctagtcagtattggaact 200  Q
    ||||||||||||  |||||||||||||||||| | | |||| |||||||| |||||||    
T  6284 gaacaaaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaact 6341  T

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