View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_8 (Length: 553)
Name: NF15789_low_8
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Original strand, 41581244 - 41581772
Alignment:
| Q |
11 |
tagcaaaggggtatagcaagcgcatattcgttaaatgttccctctcaatttgatggtcgaatctttcacctactcagttcattcgcctcctttgttaaaa |
110 |
Q |
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| T |
41581244 |
tagcaaaagggtatagcaagcgcatattcgttaaatgttccctctcaatttgatggtcgaatcttccacctactcagttcattcgcctcctttgttaaaa |
41581343 |
T |
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| Q |
111 |
ctaccataatacccacttttaatcaagcaatcatttgcaaacaaatagaaatcactatggcaattatgtcaagccacttaacacatacataaagtatcat |
210 |
Q |
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| T |
41581344 |
ctaccataatacccacttttaatcaagcaatcatttgcaaacaaatagaaatcactatggcaattatgtcaagccacttaacacatacataaagtatcat |
41581443 |
T |
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| Q |
211 |
aaattcataattgttgtttacaaaggaaaatgaatctaattcgcaagcaaaacgaccacgactgatacaaataaaaaatatggtttcgcaatgtgaccct |
310 |
Q |
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| T |
41581444 |
aaattcataattgttgtttacaaaggaaaatgaatccaattcgcaagcaaaacgaccacgactgatacaaataaaaaatatggtttcgcaatgtgaccct |
41581543 |
T |
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| Q |
311 |
tttgcttctcatgcttgtgctgctttctctgccttttgcatctatctctttgagatttcaataaggtaatccaccatctcttttgaactttacaactcac |
410 |
Q |
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| T |
41581544 |
tttgcttctcatgcttgtgctgctttctctgccttttgcatctatctctttgagatttcaataaggtaatccaccatctcttttgaactttacaactcac |
41581643 |
T |
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| Q |
411 |
cttacaattctgctattttacatcgtttttcactggttttacgtgctaaaccaattctattgctttcaattatgggatcaataagaaattaaaacaagta |
510 |
Q |
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| T |
41581644 |
cttacaattctgctattttacatcgtttttcactggttttacgtgctaaaccaattttattgctttcaattatgggatcaataagaaattaaaacaagta |
41581743 |
T |
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| Q |
511 |
agtaaaattttcatttttctattgttgct |
539 |
Q |
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| T |
41581744 |
agtaaaattttcatttttctattgttgct |
41581772 |
T |
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