View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15789_low_80 (Length: 215)
Name: NF15789_low_80
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_80 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1832235 - 1832021
Alignment:
| Q |
1 |
cggttaaactgactaatgaaagatattcaaggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatttaaagaccatag |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1832235 |
cggttaaactgactaatgaaagatttttaaggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatttaaagaccacag |
1832136 |
T |
|
| Q |
101 |
tgacaatgtttgacacattcaagaatatggttatattatgtctaggaatcaaaccctaactaatgttatcgctgattagaataaaacaattgcaataaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1832135 |
tgacaatgtttgacacattcaagaatatggttatattatgtctaggaatcaaaccctaactaatgttatcgctgattagaataaaacaattgcaataaaa |
1832036 |
T |
|
| Q |
201 |
atcatataataagtt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1832035 |
atcatataataagtt |
1832021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 7713662 - 7713754
Alignment:
| Q |
30 |
aggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatttaaagaccatagtgacaatgtttgacacattcaa |
122 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||| ||||||||||| || ||||| | | | || || |||||||||||| ||||||||||||| |
|
|
| T |
7713662 |
aggaccaaactcggtaaagaaagatacattcaagaatatttttgcaattttgatacaatcaaggattatagtgacaatgcttgacacattcaa |
7713754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University