View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_81 (Length: 215)
Name: NF15789_low_81
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_81 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 36199472 - 36199686
Alignment:
| Q |
1 |
cctgcaatatattccataatctgttcttgctataaaagtgccaaaccccttttttcagcctaccctacacgaggcacagggtatctgaggcctgtgatga |
100 |
Q |
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| T |
36199472 |
cctgcaatatcttctataatctgttcttgctataaaagtgccaaaccccttttttcagcctaccctacacgaggcacagggtatctgaggcctttgatga |
36199571 |
T |
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| Q |
101 |
gatgagagttgccgcaacacaattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtag |
200 |
Q |
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| T |
36199572 |
gatgagagttgccgcaccacaattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtag |
36199671 |
T |
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| Q |
201 |
tctattatctaaaac |
215 |
Q |
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| T |
36199672 |
tctattatctaaaac |
36199686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 36183859 - 36183971
Alignment:
| Q |
101 |
gatgagagttgccgcaacacaattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtag |
200 |
Q |
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| T |
36183859 |
gatgagagttgacgcaccacaattagattagggaaacattaaatttcaggtctccatctgaaattgaaaaattaaataagccaaacatcaagctagggag |
36183958 |
T |
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| Q |
201 |
tctattatctaaa |
213 |
Q |
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| T |
36183959 |
tctattatctaaa |
36183971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 36209268 - 36209360
Alignment:
| Q |
121 |
aattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtagtctattatctaaa |
213 |
Q |
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| T |
36209268 |
aattagattaaggaatgattaaatttcacacctccgcctgaaattgaaaaataaaataagccaaacatcaagctacagagtctatcatctaaa |
36209360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 36196140 - 36196209
Alignment:
| Q |
122 |
attagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagct |
194 |
Q |
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| T |
36196140 |
attagattaaggaaagattaaatttca---caccacctgaaattgaaaaataaaataagccaaacaacaagct |
36196209 |
T |
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