View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_83 (Length: 208)
Name: NF15789_low_83
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 31163151 - 31162965
Alignment:
| Q |
15 |
taatactttcctacaaatgtcaatctactctttctttctactgattcttcatcatgtagaatccaaactaaactctacaccccaaccacttatattctac |
114 |
Q |
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| T |
31163151 |
taatactttcctacaaatgtcaatctactctttctttctactgattcttcatcatgtagaatccaaactaaactctacaccccaaccacttatattctac |
31163052 |
T |
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| Q |
115 |
cacctttcaatttcccaaccactaaactctaatattgttatata-----------tgttcaaccttatattctcccacctttcaatt |
190 |
Q |
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| T |
31163051 |
cacctttcaatttcccaaccactaaactctaatattgttatatatgtattatatttgttcaaccttatattctcccacctttcaatt |
31162965 |
T |
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