View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_85 (Length: 206)
Name: NF15789_low_85
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 27424980 - 27425152
Alignment:
| Q |
16 |
aagaaatattcaaaatctcggattgttcttttacatgcatcctatccattctcaaaggaagcatcatatctagcatcagtgtaccctcaggtaaacattt |
115 |
Q |
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| T |
27424980 |
aagaaatattcaaaatctcggattgttcttttacatgcatcctatccattctcaaaggaagcatcatatctagcatcagtgtaccctcaggtaaacattt |
27425079 |
T |
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| Q |
116 |
tatatctcggtgacttgtattagtagatttgaatatggattacatgttcactcgtaggtaataacacaatatt |
188 |
Q |
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| T |
27425080 |
tatatctcggtgatttgtattagtagatttgaatatggattacatgttcactcgtaggtaataacacaatatt |
27425152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 27403952 - 27404123
Alignment:
| Q |
16 |
aagaaatattcaaaatctcggattgttcttttacatgcatcctatccattctcaaaggaagcatcatatctagcatcagtgtaccctcaggtaaacattt |
115 |
Q |
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| T |
27403952 |
aagagatactcaaaatctcggatcgttcttttacatgcatcctatccattctcaagggaagcatcatatctagcatctgtgtaccctcaggtaaacattt |
27404051 |
T |
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| Q |
116 |
tatatctcggtgacttgt--attagtagatttgaatatggattacatgttcactcgtaggtaataacacaat |
185 |
Q |
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| T |
27404052 |
cataactcagtgacttgttcattactagatttgaatatggattacatgttcactggtaggtaataacacaat |
27404123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 27449901 - 27449950
Alignment:
| Q |
37 |
attgttcttttacatgcatcctatccattctcaaaggaagcatcatatct |
86 |
Q |
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| T |
27449901 |
attgttcttttacatacatcatatccattctcaaaggaagcatcatatct |
27449950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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