View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1578_high_1 (Length: 389)

Name: NF1578_high_1
Description: NF1578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1578_high_1
NF1578_high_1
[»] chr5 (10 HSPs)
chr5 (10-258)||(2017977-2018225)
chr5 (182-254)||(32389626-32389698)
chr5 (182-237)||(18175227-18175282)
chr5 (182-257)||(39147730-39147805)
chr5 (197-259)||(28758425-28758487)
chr5 (262-311)||(2017296-2017345)
chr5 (195-256)||(18147719-18147780)
chr5 (217-257)||(3198330-3198370)
chr5 (217-257)||(17861979-17862019)
chr5 (217-257)||(40445983-40446023)
[»] chr7 (27 HSPs)
chr7 (182-257)||(30806118-30806193)
chr7 (182-257)||(3392470-3392545)
chr7 (182-257)||(10244881-10244956)
chr7 (190-257)||(41854000-41854067)
chr7 (182-251)||(12935749-12935818)
chr7 (217-257)||(30872025-30872065)
chr7 (190-257)||(12640589-12640656)
chr7 (190-257)||(15106691-15106758)
chr7 (182-257)||(45284811-45284886)
chr7 (215-257)||(8227349-8227391)
chr7 (215-257)||(21597680-21597722)
chr7 (182-260)||(37411729-37411807)
chr7 (213-247)||(40518912-40518946)
chr7 (213-258)||(4611241-4611286)
chr7 (222-255)||(45329141-45329174)
chr7 (217-257)||(1285090-1285130)
chr7 (217-257)||(3948054-3948094)
chr7 (217-257)||(9819570-9819610)
chr7 (217-257)||(10721495-10721535)
chr7 (185-257)||(23274809-23274881)
chr7 (217-257)||(29461842-29461882)
chr7 (218-258)||(31170226-31170266)
chr7 (190-246)||(31769512-31769568)
chr7 (190-258)||(32984217-32984285)
chr7 (212-260)||(35743795-35743842)
chr7 (217-257)||(47607931-47607971)
chr7 (217-257)||(48527190-48527230)
[»] chr4 (20 HSPs)
chr4 (198-260)||(21442637-21442699)
chr4 (182-247)||(49056788-49056853)
chr4 (190-257)||(9661553-9661620)
chr4 (182-257)||(27091464-27091539)
chr4 (213-259)||(35851724-35851770)
chr4 (190-258)||(46582636-46582704)
chr4 (182-257)||(37310030-37310105)
chr4 (182-257)||(40051625-40051700)
chr4 (194-257)||(50376653-50376716)
chr4 (190-257)||(53572327-53572394)
chr4 (190-247)||(1458018-1458075)
chr4 (182-247)||(22433363-22433428)
chr4 (182-247)||(30057235-30057300)
chr4 (182-247)||(32339337-32339402)
chr4 (182-246)||(38433322-38433386)
chr4 (182-247)||(41137912-41137977)
chr4 (184-257)||(52699192-52699265)
chr4 (197-257)||(4234292-4234352)
chr4 (202-246)||(10042430-10042474)
chr4 (217-257)||(33933766-33933806)
[»] chr2 (19 HSPs)
chr2 (179-256)||(30392821-30392898)
chr2 (185-258)||(23919472-23919545)
chr2 (217-260)||(12413490-12413533)
chr2 (217-260)||(12425550-12425593)
chr2 (190-257)||(14663987-14664054)
chr2 (190-257)||(15233416-15233483)
chr2 (218-257)||(15625345-15625384)
chr2 (182-257)||(23405199-23405274)
chr2 (194-257)||(28202297-28202360)
chr2 (217-259)||(6141218-6141260)
chr2 (194-251)||(9375104-9375161)
chr2 (217-258)||(29734690-29734731)
chr2 (194-247)||(33424323-33424376)
chr2 (217-257)||(3197100-3197140)
chr2 (215-255)||(3904204-3904244)
chr2 (190-246)||(19612729-19612785)
chr2 (217-257)||(25186263-25186303)
chr2 (217-257)||(27244657-27244697)
chr2 (217-257)||(39761438-39761478)
[»] chr1 (18 HSPs)
chr1 (184-257)||(31401239-31401312)
chr1 (195-247)||(4865827-4865879)
chr1 (195-257)||(10292936-10292998)
chr1 (182-247)||(11333677-11333742)
chr1 (182-247)||(11491698-11491763)
chr1 (182-237)||(3229706-3229761)
chr1 (190-257)||(6702579-6702646)
chr1 (190-257)||(14519323-14519390)
chr1 (190-257)||(15775742-15775809)
chr1 (182-257)||(36666568-36666643)
chr1 (215-257)||(41573288-41573330)
chr1 (213-246)||(17517027-17517060)
chr1 (211-252)||(48145125-48145166)
chr1 (217-257)||(9116893-9116933)
chr1 (217-257)||(15595728-15595768)
chr1 (217-257)||(24874141-24874181)
chr1 (217-257)||(44641527-44641567)
chr1 (213-257)||(48607772-48607816)
[»] chr6 (12 HSPs)
chr6 (182-257)||(2488878-2488953)
chr6 (202-254)||(30527768-30527820)
chr6 (217-260)||(2692212-2692255)
chr6 (215-254)||(10999153-10999192)
chr6 (195-258)||(24623316-24623379)
chr6 (190-257)||(30938391-30938458)
chr6 (215-258)||(33608336-33608379)
chr6 (218-260)||(8330697-8330739)
chr6 (215-257)||(16453356-16453398)
chr6 (190-247)||(27218897-27218954)
chr6 (218-258)||(28957108-28957148)
chr6 (217-257)||(29069483-29069523)
[»] chr3 (13 HSPs)
chr3 (182-257)||(52309102-52309177)
chr3 (215-257)||(31085008-31085050)
chr3 (217-257)||(12976623-12976663)
chr3 (182-257)||(4227736-4227811)
chr3 (215-257)||(7827508-7827550)
chr3 (215-257)||(7829896-7829938)
chr3 (190-260)||(32776211-32776281)
chr3 (213-247)||(35718579-35718613)
chr3 (218-260)||(48209233-48209275)
chr3 (182-256)||(49443415-49443489)
chr3 (214-246)||(11995145-11995177)
chr3 (203-247)||(36763442-36763486)
chr3 (217-257)||(37921019-37921059)
[»] chr8 (11 HSPs)
chr8 (182-256)||(12770372-12770446)
chr8 (188-252)||(12510433-12510497)
chr8 (202-258)||(20872470-20872526)
chr8 (195-258)||(23435238-23435301)
chr8 (217-260)||(24696027-24696070)
chr8 (190-257)||(42880951-42881018)
chr8 (182-256)||(11231424-11231498)
chr8 (182-260)||(13105091-13105169)
chr8 (185-257)||(2294094-2294166)
chr8 (217-257)||(7553679-7553719)
chr8 (197-257)||(17499097-17499157)
[»] scaffold0330 (1 HSPs)
scaffold0330 (182-247)||(6781-6846)
[»] scaffold0445 (1 HSPs)
scaffold0445 (190-257)||(4014-4081)
[»] scaffold0519 (1 HSPs)
scaffold0519 (182-256)||(2954-3028)
[»] scaffold0012 (1 HSPs)
scaffold0012 (190-256)||(122550-122616)
[»] scaffold0031 (1 HSPs)
scaffold0031 (213-257)||(50024-50068)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 2018225 - 2017977
Alignment:
Q  10 gacatcatcttttctttcttaatagcccatggtgtttgtggagggttatagaacttaattggtatgaattatgggataagaagtgagattttttagttca 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018225 gacatcatcttttctttcttaatagcccatggtgtttgtggaaggttatagaacttaattggtatgaattatgggataagaagtgagattttttagttca 2018126  T
Q  110 atttcttagttcaaacataaatcgtaggagagtattttatattttttattgggtcagggagacttaaa-taacaagtgggatgtctggggtttgaactcc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  2018125 atttcttagttcaaacataaatcgtaggagagtattttatattttttattgggtcaaggagacttaaagtaacaagtgggatgtct-gggttagaactcc 2018027  T
Q  209 gtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  2018026 gtcttctacatatattatacaatgtccctatcaactgagataaactcaca 2017977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 32389626 - 32389698
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaact 254  Q
    ||||||| |||||||  ||||||||||| |||||||||||| |||||||| || ||| |||||||| ||||||    
T  32389626 aagtggggtgtctggaatttgaactccgactcctacatataatatgcaatatctctaccaactgagctaaact 32389698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 18175282 - 18175227
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccct 237  Q
    ||||||||||||||||||| |||| ||| | |||||||||| ||||||| ||||||    
T  18175282 aagtgggatgtctggggttcgaaccccgacccctacatataatatgcaacgtccct 18175227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 39147805 - 39147730
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| ||| ||||||| |||||||  |||| ||||||| |||||| | | |||| ||||||||||||||||||    
T  39147805 aagtggggtgtttggggttcgaactccagctccaacatataatatgcagtattcctaccaactgagataaactcac 39147730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 28758425 - 28758487
Alignment:
Q  197 ggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacat 259  Q
    ||||||||| ||| ||||| |||| ||||||||||||||||| |||||||  |||| ||||||    
T  28758425 ggtttgaaccccgactcctgcataaattatgcaatgtccctaccaactgaattaaagtcacat 28758487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 2017345 - 2017296
Alignment:
Q  262 aaccagcttatcacattgctagactctcataccttccaaaattttgtgtg 311  Q
    ||||||||||||||||| ||||  ||||| | ||||||||||||||||||    
T  2017345 aaccagcttatcacattcctagcttctcaaatcttccaaaattttgtgtg 2017296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 18147780 - 18147719
Alignment:
Q  195 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 256  Q
    |||| |||||| |||  |||| ||||||||||||| ||||| ||||||||||| ||||||||    
T  18147780 gggggttgaaccccggatcctgcatatattatgcattgtccttatcaactgagctaaactca 18147719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 3198370 - 3198330
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  3198370 catatattatgcaatgtccctaccaactgagctaagctcac 3198330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 17862019 - 17861979
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| |||||||| |||||||| |||||||||    
T  17862019 catatattatgcattgtccctaccaactgagctaaactcac 17861979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 40446023 - 40445983
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  40446023 catatattatgcattgtccttatcaactgagttaaactcac 40445983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 30806193 - 30806118
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||| |||||| |||||||| | ||| |||||| |||||||| |||||| |||||||| |||||||||    
T  30806193 aagtgggatgtccggggttcgaactccgacccctgcatataatatgcaatatccctaccaactgagctaaactcac 30806118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 3392545 - 3392470
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| ||||||||||| |||| ||| | |||||||||| |||||||| ||| ||||||||||| ||| |||||    
T  3392545 aagtggggtgtctggggttcgaaccccgacccctacatataatatgcaatatccatatcaactgagttaagctcac 3392470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 10244881 - 10244956
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| |||| |||||| |||| ||| |||||||||||| |||||||| |||||| |||||||| ||| |||||    
T  10244881 aagtggggtgtccggggttcgaaccccggctcctacatataatatgcaatatccctaccaactgagctaagctcac 10244956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 41854067 - 41854000
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| ||||||||||||||||| ||| |||| ||||||||||||||||  |||||||| ||| |||||    
T  41854067 tgtccggggtttgaactccgtcccctgcataaattatgcaatgtccctgccaactgagctaagctcac 41854000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 12935818 - 12935749
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataa 251  Q
    |||||||  |||||||||| |||| || || |||||||| ||||||||||||||||  ||||||||||||    
T  12935818 aagtggggcgtctggggttcgaaccccatcccctacataaattatgcaatgtccctgccaactgagataa 12935749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 30872065 - 30872025
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  30872065 catatattatgcaatgtccataccaactgagataaactcac 30872025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 12640589 - 12640656
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  12640589 tgtctggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcac 12640656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 15106691 - 15106758
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  15106691 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagttaagctcac 15106758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 45284811 - 45284886
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| ||||| |||||||||||||||||||| ||| |||||    
T  45284811 aagtggggtgtccggggttcgaaccccgacccctgcataaattattcaatgtccctatcaactgagctaagctcac 45284886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 8227391 - 8227349
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  8227391 tacatatattatgcattgtccttatcaactgagctaaactcac 8227349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 21597722 - 21597680
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||    
T  21597722 tacatatattatgcattgtccatatcaactgagataagctcac 21597680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 37411729 - 37411807
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||| |||| || |||  ||||||| | ||| |||| ||||||||||||||||| ||| |||| ||||||||||||    
T  37411729 aagtggggtgtccggagttcaaactccgacccctgcataaattatgcaatgtccctaccaattgagctaaactcacatg 37411807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 40518912 - 40518946
Alignment:
Q  213 cctacatatattatgcaatgtccctatcaactgag 247  Q
    |||||||||||||||||||||||||| ||||||||    
T  40518912 cctacatatattatgcaatgtccctaccaactgag 40518946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 4611286 - 4611241
Alignment:
Q  213 cctacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||||||| ||||||||||||||||| |||||||| ||| ||||||    
T  4611286 cctacataaattatgcaatgtccctaccaactgagctaagctcaca 4611241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 45329174 - 45329141
Alignment:
Q  222 attatgcaatgtccctatcaactgagataaactc 255  Q
    ||||||||||||||||| ||||||||||||||||    
T  45329174 attatgcaatgtccctaccaactgagataaactc 45329141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 1285090 - 1285130
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||| ||||||||||||| |||||||||    
T  1285090 catatattatgcattgttcctatcaactgagttaaactcac 1285130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 3948094 - 3948054
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| |||| |||||||||||| |||||||||    
T  3948094 catatattatgcattgtctctatcaactgagttaaactcac 3948054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 9819570 - 9819610
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||| |||| ||||||||||||||||||    
T  9819570 catatattatgcattgttcctaccaactgagataaactcac 9819610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 10721495 - 10721535
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||| |||| ||||||||||||||||||    
T  10721495 catatattatgcattgttcctaccaactgagataaactcac 10721535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 23274809 - 23274881
Alignment:
Q  185 tgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||| ||||| || ||| |||||    
T  23274809 tggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaacttagctaagctcac 23274881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 29461842 - 29461882
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| |||||||| |||||||| |||||||||    
T  29461842 catatattatgcattgtccctaccaactgagttaaactcac 29461882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 31170226 - 31170266
Alignment:
Q  218 atatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||||||||||||| || |||||||||||| ||||||||||    
T  31170226 atatattatgcaatatctctatcaactgagctaaactcaca 31170266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 31769512 - 31769568
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 246  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||    
T  31769512 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactga 31769568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 32984217 - 32984285
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||| ||||||||||| ||| |||||  ||||| |||||||| |||||| |||||||| ||| ||||||    
T  32984217 tgtccggggtttgaaccccgactcctgtatataatatgcaatatccctaccaactgagctaagctcaca 32984285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 35743842 - 35743795
Alignment:
Q  212 tcctacatatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||||||||||||||||||  |||||||||||| |||| |||||||    
T  35743842 tcctacatatattatgcaatgt-tctatcaactgagttaaattcacatg 35743795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 47607931 - 47607971
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||| |||||||||| |||||||| |||||||||    
T  47607931 catatattatgtaatgtccctaccaactgagctaaactcac 47607971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 48527230 - 48527190
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  48527230 catatattatgcattgtccttatcaactgagataagctcac 48527190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 21442637 - 21442699
Alignment:
Q  198 gtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||| |||| ||||| | | ||||||||||||||||||||||||||| ||||||||||||    
T  21442637 gtttgaattccgactccttcctctattatgcaatgtccctatcaactgagttaaactcacatg 21442699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 49056853 - 49056788
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||| |||| |||||| |||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  49056853 aagtggggtgtccggggttcgaactccggctcctgcatataatatgcaatgtccctaccaactgag 49056788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 9661620 - 9661553
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| |||||| |||||||| ||| |||||||| |||||||| ||| || ||||||||||||||||||    
T  9661620 tgtccggggttcgaactccgactcttacatataatatgcaatatccataccaactgagataaactcac 9661553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 27091464 - 27091539
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||| |||||| |||||||| | ||| || | ||||| ||||||||||| |||||||| |||||||||    
T  27091464 aagtgggatgtccggggttcgaactccgacccctgcagaaattatacaatgtccctaccaactgagctaaactcac 27091539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 35851724 - 35851770
Alignment:
Q  213 cctacatatattatgcaatgtccctatcaactgagataaactcacat 259  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||    
T  35851724 cctacatatattatgcaatgtccctaccaactgagttaagctcacat 35851770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 46582704 - 46582636
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    ||||||||||| ||||  || ||||| |||||| |||||||| |||||| |||||||| ||||||||||    
T  46582704 tgtctggggttcgaacctcggctcctgcatataatatgcaatatccctaccaactgagctaaactcaca 46582636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 37310105 - 37310030
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||  ||||||||||| ||  | |||||||||| |||||||| ||| || |||||||| |||||||||    
T  37310105 aagtgggatgtacggggtttgaaccccaacccctacatataatatgcaatatccataccaactgagttaaactcac 37310030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 40051700 - 40051625
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| ||||||||||| |||| ||  | |||||||||| |||||||| |||||| |||||||| ||| |||||    
T  40051700 aagtggggtgtctggggttcgaacccctacccctacatataatatgcaatatccctaccaactgagctaagctcac 40051625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 50376653 - 50376716
Alignment:
Q  194 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| |||| || || ||| |||||||||||||||||| ||| |||||||| |||||||||    
T  50376653 tggggttcgaaccccttcccctgcatatattatgcaatgtctctaccaactgagttaaactcac 50376716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 53572327 - 53572394
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| ||||||||||  ||| ||||| |||||| |||||||| ||||||||||||||| ||| |||||    
T  53572327 tgtccggggtttgaatcccggctcctgcatataatatgcaatatccctatcaactgagttaagctcac 53572394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 1458018 - 1458075
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    |||| |||||| |||| ||| ||||| |||||| |||||||| |||||||||||||||    
T  1458018 tgtccggggttcgaaccccggctcctgcatataatatgcaatatccctatcaactgag 1458075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 22433363 - 22433428
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    |||||| |||| || |||| |||||| | | ||| ||||||||||||||||| |||||||||||||    
T  22433363 aagtggaatgtttgaggttcgaactctgaccccttcatatattatgcaatgttcctatcaactgag 22433428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 30057300 - 30057235
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||| |||| ||||||||||| ||| | ||| |||||| |||||||| |||||| ||||||||    
T  30057300 aagtggggtgtccggggtttgaaccccgacccctgcatataatatgcaatatccctaccaactgag 30057235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 32339402 - 32339337
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||| |||||||||||||||| ||| | | | |||||| |||||||| |||||| ||||||||    
T  32339402 aagtggggtgtctggggtttgaaccccgacccttgcatataatatgcaatatccctaacaactgag 32339337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 38433386 - 38433322
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatat-attatgcaatgtccctatcaactga 246  Q
    ||||||| ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||||||||||    
T  38433386 aagtggggtgtctggggttcgaactccgactcctacatataataatgcattgt-cctatcaactga 38433322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 41137912 - 41137977
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||| |||||| |||| |||| ||  | ||| |||||||||||||||||||||| ||||||||    
T  41137912 aagtggggtgtctgtggttcgaaccccaacccctgcatatattatgcaatgtccctaccaactgag 41137977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 52699265 - 52699192
Alignment:
Q  184 gtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||| |||| |||||||  | |||  ||||| |||||||| | ||||||||||||| |||||||||    
T  52699265 gtgggatgtctgaggttcgaactccaacccctgtatataatatgcaatattcctatcaactgagttaaactcac 52699192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 4234292 - 4234352
Alignment:
Q  197 ggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| |||| ||| ||||| |||||| |||||||| ||||||||||||||| ||| |||||    
T  4234292 ggttcgaaccccggctcctgcatataatatgcaatatccctatcaactgagctaagctcac 4234352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 10042430 - 10042474
Alignment:
Q  202 gaactccgtctcctacatatattatgcaatgtccctatcaactga 246  Q
    |||||||| |||||||||||| |||||||| |||||| |||||||    
T  10042430 gaactccgactcctacatataatatgcaatatccctaccaactga 10042474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 33933766 - 33933806
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  33933766 catatattatgcaatgtccctaccaactgagctaagctcac 33933806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 30392821 - 30392898
Alignment:
Q  179 aacaagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 256  Q
    |||||||||  ||||||||||| |||| ||| |||||||||||| |||||||| |||||| |||||||| ||| ||||    
T  30392821 aacaagtggagtgtctggggttcgaaccccgactcctacatataatatgcaatatccctaccaactgagctaagctca 30392898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 23919472 - 23919545
Alignment:
Q  185 tgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||| |||||||| || |||| ||| | ||| |||||||||||||||||||||| |||||||| ||| ||||||    
T  23919472 tggggtgtctgggattcgaaccccgacccctccatatattatgcaatgtccctaccaactgagctaagctcaca 23919545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 12413533 - 12413490
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||    
T  12413533 catatattatgcattgtccttatcaaccgagataaactcacatg 12413490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 12425593 - 12425550
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||    
T  12425593 catatattatgcattgtccttatcaaccgagataaactcacatg 12425550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 14664054 - 14663987
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| ||||||||||||| | | ||| |||| ||||||||||||||||| |||||||  |||||||||    
T  14664054 tgtccggggtttgaactctggcccctgcataaattatgcaatgtccctaccaactgaactaaactcac 14663987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 15233483 - 15233416
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||||||||||| | ||| |||||| |||||||| |||||| ||| |||| ||| |||||    
T  15233483 tgtctggggtttgaactccggcccctgcatataatatgcaatatccctaccaattgagctaagctcac 15233416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 15625345 - 15625384
Alignment:
Q  218 atatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  15625345 atatattatgcaatgtccctatcaattgagctaaactcac 15625384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 23405274 - 23405199
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| ||||  ||||| |||| ||| | ||| |||||||||||||||||||||| |||||||| ||| |||||    
T  23405274 aagtggggtgtccagggttcgaaccccgacccctgcatatattatgcaatgtccctaccaactgagctaagctcac 23405199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 28202360 - 28202297
Alignment:
Q  194 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||   | ||||||||||||||| ||||||||||||||||| ||| |||||    
T  28202360 tggggtttgaacttcggaccttacatatattatgcattgtccctatcaactgagctaagctcac 28202297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 6141260 - 6141218
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcacat 259  Q
    ||||||||||||| ||||| || ||||||||||||||||||||    
T  6141260 catatattatgcattgtccttaccaactgagataaactcacat 6141218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 9375104 - 9375161
Alignment:
Q  194 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataa 251  Q
    ||||||| |||| ||| | ||||||||||||||||||||| |||  ||||||||||||    
T  9375104 tggggttcgaaccccgacccctacatatattatgcaatgttcctgccaactgagataa 9375161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 29734731 - 29734690
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||    
T  29734731 catatattatgcattgtccatatcaactgagctaaactcaca 29734690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 33424323 - 33424376
Alignment:
Q  194 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||||||||||||  || | ||||||||||||| |||||||||||| ||||    
T  33424323 tggggtttgaactccgaatcttgcatatattatgcactgtccctatcaattgag 33424376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 3197100 - 3197140
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| |||||||| |||||||| |||||||||    
T  3197100 catatattatgcattgtccctaccaactgagctaaactcac 3197140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 3904244 - 3904204
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactc 255  Q
    ||||||||||||||| |||||||||||||| || |||||||    
T  3904244 tacatatattatgcattgtccctatcaactaagttaaactc 3904204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 19612785 - 19612729
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 246  Q
    ||||||||||| |||| ||  |||||||||||| |||||||| |||||| |||||||    
T  19612785 tgtctggggttcgaaccccagctcctacatataatatgcaatatccctaccaactga 19612729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 25186263 - 25186303
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  25186263 catatattatgcattgtccatatcaactgagctaaactcac 25186303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 27244697 - 27244657
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||||||||||||||| ||| |||||    
T  27244697 catatattatgcattgtccctatcaactgagctaagctcac 27244657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 39761478 - 39761438
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  39761478 catatattatgcattgtccttatcaactgagctaaactcac 39761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 31401239 - 31401312
Alignment:
Q  184 gtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||| |||| |||||||||||  || ||||| |||| |||||||||||||||||||||||||| ||| |||||    
T  31401239 gtggggtgtccggggtttgaacctcggctcctgcataaattatgcaatgtccctatcaactgagctaagctcac 31401312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 4865827 - 4865879
Alignment:
Q  195 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||||||||    
T  4865827 ggggttcgaactccgacccctacatatattatgcaatgtccctaccaactgag 4865879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 10292998 - 10292936
Alignment:
Q  195 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| ||| ||||| | ||||||||||||||| ||||||||||||||||| ||| |||||    
T  10292998 ggggtttaaaccccgtcccttacatatattatgcattgtccctatcaactgagttaagctcac 10292936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 11333742 - 11333677
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||| ||||||||    
T  11333742 aagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgag 11333677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 11491763 - 11491698
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||| ||||||||    
T  11491763 aagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgag 11491698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 3229706 - 3229761
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccct 237  Q
    |||||||||||| ||||||||||| ||  | |||||||||||||||||| ||||||    
T  3229706 aagtgggatgtccggggtttgaaccccaacccctacatatattatgcaacgtccct 3229761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 6702646 - 6702579
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  6702646 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcac 6702579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 14519390 - 14519323
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||| | |||| ||| |||||  ||||| |||| ||| |||||||||||||||||||||||||    
T  14519390 tgtctggggctcgaaccccgactcctgaatataatatggaatatccctatcaactgagataaactcac 14519323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 15775809 - 15775742
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||| |||||||| ||||| |||||| |||||||| |||||| ||| |||| ||| |||||    
T  15775809 tgtctggggttcgaactccggctcctgcatataatatgcaatatccctaccaattgagttaagctcac 15775742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 36666568 - 36666643
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| ||||||||||||||||| |||||||| ||| |||||    
T  36666568 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagctcac 36666643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 41573288 - 41573330
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||||| |||||||| |||||||| |||||||||    
T  41573288 tacatatattatgcattgtccctaccaactgagttaaactcac 41573330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 17517027 - 17517060
Alignment:
Q  213 cctacatatattatgcaatgtccctatcaactga 246  Q
    ||||||||||||||| ||||||||||||||||||    
T  17517027 cctacatatattatgtaatgtccctatcaactga 17517060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 48145125 - 48145166
Alignment:
Q  211 ctcctacatatattatgcaatgtccctatcaactgagataaa 252  Q
    ||||||| |||||||| ||||||||||| |||||||||||||    
T  48145125 ctcctacctatattatacaatgtccctaccaactgagataaa 48145166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 9116893 - 9116933
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  9116893 catatattatgcattgtccatatcaactgagttaaactcac 9116933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 15595768 - 15595728
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  15595768 catatattatgcaatgtccctaccaactgagctaagctcac 15595728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 24874181 - 24874141
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| |||||||||||||||||||||||||| ||| |||||    
T  24874181 cataaattatgcaatgtccctatcaactgagctaagctcac 24874141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 44641567 - 44641527
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  44641567 catatattatgcattgtccatatcaactgagctaaactcac 44641527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 48607772 - 48607816
Alignment:
Q  213 cctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||  ||||||| ||||||||||||||| |||||||||    
T  48607772 cctacatataaaatgcaatatccctatcaactgagttaaactcac 48607816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 2488878 - 2488953
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||||| |||||| |||||||| | ||| || | ||||| ||||||||||| |||||||| |||||||||    
T  2488878 aagtgggatgtccggggttcgaactccgacccctgcagaaattatacaatgtccctaccaactgagctaaactcac 2488953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 30527820 - 30527768
Alignment:
Q  202 gaactccgtctcctacatatattatgcaatgtccctatcaactgagataaact 254  Q
    |||||||  |||||| |||||||||||||| |||||||||| |||||||||||    
T  30527820 gaactccaactcctatatatattatgcaatatccctatcaattgagataaact 30527768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 2692255 - 2692212
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||    
T  2692255 catatattatgcattgtccatatcaactgagataatctcacatg 2692212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 10999192 - 10999153
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaact 254  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  10999192 tacatatattatgcaatgtccttatcaactgagttaaact 10999153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 24623316 - 24623379
Alignment:
Q  195 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    ||||||||||| |||   | ||||||||||||||| ||||| ||||||||||| ||||||||||    
T  24623316 ggggtttgaaccccgaaccttacatatattatgcattgtccatatcaactgagctaaactcaca 24623379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 30938458 - 30938391
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||| |||| |||   ||| |||||||||||||||||||||| |||||||| ||| |||||    
T  30938458 tgtctggggttcgaaccccggtccctgcatatattatgcaatgtccctaccaactgagttaagctcac 30938391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 33608379 - 33608336
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||||||||||| || ||||| ||||||||||||||||||||||    
T  33608379 tacatatattatacattgtccttatcaactgagataaactcaca 33608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 8330739 - 8330697
Alignment:
Q  218 atatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||||||||||||||||||| |||||  ||||||||||||    
T  8330739 atatattatgcaatgtccctatctactgaactaaactcacatg 8330697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 16453356 - 16453398
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| | |||||||| ||||||||||||||||||    
T  16453356 tacatatattatgtattgtccctaccaactgagataaactcac 16453398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 27218954 - 27218897
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    |||| |||||| |||  ||| |||||||||||| |||||||| |||||||||||||||    
T  27218954 tgtccggggttcgaatcccggctcctacatataatatgcaatatccctatcaactgag 27218897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 28957148 - 28957108
Alignment:
Q  218 atatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||||||||||||||||  ||||||||||| ||||||||||    
T  28957148 atatattatgcaatgtctttatcaactgagttaaactcaca 28957108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 29069523 - 29069483
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||||||||||||||| ||| |||||    
T  29069523 catatattatgcattgtccctatcaactgagctaagctcac 29069483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 52309102 - 52309177
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  52309102 aagtggggtgtctggggttcgaaccccgactcctgcatatagtatgcaatatccctaccaactgagttaagctcac 52309177  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 31085050 - 31085008
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  31085050 tacatatattatgcactgtccttatcaactgagataaactcac 31085008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 12976623 - 12976663
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  12976623 catatattatgcattgtccctatcaactgagttaaactcac 12976663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 4227736 - 4227811
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||| |||| || ||| |||| ||| | ||| |||| ||||||||||||||||| |||||||| |||||||||    
T  4227736 aagtggggtgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaactgagctaaactcac 4227811  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 7827550 - 7827508
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  7827550 tacatatattatgcattgtccatatcaactgagttaaactcac 7827508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 7829938 - 7829896
Alignment:
Q  215 tacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  7829938 tacatatattatgcattgtccatatcaactgagttaaactcac 7829896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 32776281 - 32776211
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    |||| |||||| |||| ||| | ||| |||| ||||||||||||||||| |||||||| ||| ||||||||    
T  32776281 tgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagctcacatg 32776211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 35718579 - 35718613
Alignment:
Q  213 cctacatatattatgcaatgtccctatcaactgag 247  Q
    |||||||||||||||||||||||||| ||||||||    
T  35718579 cctacatatattatgcaatgtccctaccaactgag 35718613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 48209233 - 48209275
Alignment:
Q  218 atatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    |||||||||| | ||||||||||||||||| ||||||||||||    
T  48209233 atatattatgtattgtccctatcaactgagctaaactcacatg 48209275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 49443415 - 49443489
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 256  Q
    ||||||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||  ||| |||| ||||||||    
T  49443415 aagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctgccaattgagctaaactca 49443489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 11995177 - 11995145
Alignment:
Q  214 ctacatatattatgcaatgtccctatcaactga 246  Q
    ||||||| |||||||||||||||||||||||||    
T  11995177 ctacataaattatgcaatgtccctatcaactga 11995145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 36763486 - 36763442
Alignment:
Q  203 aactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||| | ||| |||||||||||||||||||||| ||||||||    
T  36763486 aactccggcccctgcatatattatgcaatgtccctaccaactgag 36763442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 37921019 - 37921059
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| | ||||||||||||||| |||||||||    
T  37921019 catatattatgcattatccctatcaactgagctaaactcac 37921059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 12770446 - 12770372
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 256  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| |||||||||||||||||||||||||| ||| ||||    
T  12770446 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctatcaactgagctaagctca 12770372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 12510433 - 12510497
Alignment:
Q  188 gatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaa 252  Q
    |||||||| |||| |||||||| | | ||||||||||||||||||||||||| || |||| ||||    
T  12510433 gatgtctgaggttcgaactccgacccatacatatattatgcaatgtccctattaattgagttaaa 12510497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 20872470 - 20872526
Alignment:
Q  202 gaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||||||| | ||| |||| |||||||||||||||||||||||||| ||| ||||||    
T  20872470 gaactccgacccctgcataaattatgcaatgtccctatcaactgagctaagctcaca 20872526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 23435238 - 23435301
Alignment:
Q  195 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 258  Q
    |||||| |||| ||| ||||| |||||| |||||||| ||||||||||||||| ||| ||||||    
T  23435238 ggggttcgaaccccggctcctgcatataatatgcaatatccctatcaactgagctaagctcaca 23435301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 24696027 - 24696070
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||    
T  24696027 catatattatgcattgtccatatcaactgagataatctcacatg 24696070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 42881018 - 42880951
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| |||||| |||| ||| |||||||||||| |||||||| |||||| |||||||| ||| |||||    
T  42881018 tgtccggggttcgaaccccggctcctacatataatatgcaatatccctaccaactgagttaagctcac 42880951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 11231498 - 11231424
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 256  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| |||||||||||||||| ||||||||| ||| ||||    
T  11231498 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgagctaagctca 11231424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 13105169 - 13105091
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacatg 260  Q
    ||||||| |||||| |||| |||| ||| | | | ||||||||||||| |||||||| |||||||| ||| ||||||||    
T  13105169 aagtggggtgtctgaggttcgaaccccggcccttgcatatattatgcattgtccctaccaactgagttaatctcacatg 13105091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 2294094 - 2294166
Alignment:
Q  185 tgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||| ||||||||||| |||| ||| | ||| |||||| |||| ||| |||||||||| |||| |||||||||    
T  2294094 tggggtgtctggggttcgaaccccgacccctgcatataatatgtaatatccctatcaattgagctaaactcac 2294166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 7553719 - 7553679
Alignment:
Q  217 catatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||||| |||||||| |||||||| |||||||||    
T  7553719 catatattatgcattgtccctaccaactgagttaaactcac 7553679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 17499097 - 17499157
Alignment:
Q  197 ggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||| ||  ||||| |||| ||||||||||||||||| ||||||||  ||||||||    
T  17499097 ggtttgaacccctgctcctgcataaattatgcaatgtccctaccaactgagtcaaactcac 17499157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 6846 - 6781
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 247  Q
    ||||||||||| ||||||| ||||  || |||||||||||| |||||||| |||||| ||||||||    
T  6846 aagtgggatgtttggggttcgaacctcgactcctacatataatatgcaatatccctaccaactgag 6781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 4014 - 4081
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  4014 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcac 4081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 2954 - 3028
Alignment:
Q  182 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 256  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| |||||||||||||||| ||||||||| ||| ||||    
T  2954 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgagctaagctca 3028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 122616 - 122550
Alignment:
Q  190 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 256  Q
    ||||||||||| ||||| || | |||||||||||||| |||||| |||| ||||| || ||||||||    
T  122616 tgtctggggttcgaacttcgacccctacatatattatacaatgttcctaccaactaagttaaactca 122550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 50024 - 50068
Alignment:
Q  213 cctacatatattatgcaatgtccctatcaactgagataaactcac 257  Q
    |||||||||| |||||||| ||||||||||||||| ||| |||||    
T  50024 cctacatataatatgcaatatccctatcaactgagttaagctcac 50068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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