View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1578_low_8 (Length: 223)

Name: NF1578_low_8
Description: NF1578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1578_low_8
NF1578_low_8
[»] chr8 (9 HSPs)
chr8 (1-223)||(3159793-3160015)
chr8 (1-223)||(2889712-2889934)
chr8 (3-220)||(3145203-3145420)
chr8 (5-223)||(2875357-2875575)
chr8 (1-172)||(2796153-2796327)
chr8 (93-171)||(18393581-18393659)
chr8 (56-171)||(27401840-27401955)
chr8 (96-171)||(1226113-1226187)
chr8 (181-223)||(2796835-2796877)
[»] chr2 (3 HSPs)
chr2 (48-171)||(17651268-17651391)
chr2 (96-171)||(44649997-44650072)
chr2 (57-171)||(4748110-4748224)
[»] chr1 (5 HSPs)
chr1 (91-171)||(3387707-3387787)
chr1 (48-171)||(16426441-16426564)
chr1 (48-152)||(50127210-50127313)
chr1 (56-171)||(3954967-3955082)
chr1 (91-171)||(48632613-48632693)
[»] scaffold0012 (1 HSPs)
scaffold0012 (91-171)||(209241-209321)
[»] chr6 (2 HSPs)
chr6 (93-171)||(2602143-2602221)
chr6 (93-171)||(33234886-33234962)
[»] scaffold1723 (1 HSPs)
scaffold1723 (91-170)||(369-447)
[»] chr7 (8 HSPs)
chr7 (108-171)||(9729906-9729969)
chr7 (48-152)||(27993911-27994015)
chr7 (93-171)||(11809308-11809386)
chr7 (103-146)||(25445505-25445549)
chr7 (91-152)||(32716562-32716623)
chr7 (107-171)||(37338793-37338857)
chr7 (93-171)||(48598363-48598441)
chr7 (97-171)||(6439797-6439871)
[»] chr4 (1 HSPs)
chr4 (109-166)||(32593896-32593953)
[»] scaffold0325 (1 HSPs)
scaffold0325 (108-171)||(12947-13010)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3159793 - 3160015
Alignment:
Q  1 tgctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaa 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||       ||||||||||||    
T  3159793 tgctacctgtatactaatttatttatgaaagatctaaattgagaatcaaatatgtatctaacttgagcaatttatttcattaaaaaaaggtctataacaa 3159892  T
Q  101 gttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatcaagattttccgca 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3159893 gttacaatagtatttggcctttatttatccatctaatatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatcaacattttccgca 3159992  T
Q  201 cgtctttaactcttgaatatact 223  Q
    |||||||||||||||||||||||    
T  3159993 cgtctttaactcttgaatatact 3160015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2889934 - 2889712
Alignment:
Q  1 tgctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaa 100  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||       ||||||||||||    
T  2889934 tgctacttgtatactaatttatttatgaaagatctaaattgagaatcacgtatgtatcttacttgagcaatttatttcattaaaaaaaggtctataacaa 2889835  T
Q  101 gttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatcaagattttccgca 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  2889834 gatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaactttatagcccttcgttgatcaacattttccgca 2889735  T
Q  201 cgtctttaactcttgaatatact 223  Q
    |||||||||||||||||||||||    
T  2889734 cgtctttaactcttgaatatact 2889712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 3145203 - 3145420
Alignment:
Q  3 ctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagt 102  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||       |||||||||||||     
T  3145203 ctacttgtatactaatttatttatgaaagatctaaattgagaatcacgcatgtatcttacttgagcaatttatttcattaaaaaaaggtctataacaaga 3145302  T
Q  103 tacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatcaagattttccgcacg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  3145303 tacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaactttatagcccttcgttgatcaacattttccgcacg 3145402  T
Q  203 tctttaactcttgaatat 220  Q
    ||||||||||||||||||    
T  3145403 tctttaactcttgaatat 3145420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 2875575 - 2875357
Alignment:
Q  5 acctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagtta 104  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||       ||| ||||||||| ||    
T  2875575 acctgtatactaatctatttatgaaagatcttaattgagaatcacatatgtatctaacttgagcaatttagttcattaaaaaaaggtttataacaagata 2875476  T
Q  105 caatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatcaagattttccgcacgtc 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  2875475 caatagtatttggcctttatttatccatctactattgaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatcaacattttcctcacgtc 2875376  T
Q  205 tttaactcttgaatatact 223  Q
    || ||||||||||||||||    
T  2875375 ttcaactcttgaatatact 2875357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 2796153 - 2796327
Alignment:
Q  1 tgctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnnnnnn---ggtctataa 97  Q
    |||||| | ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||          |||||||||    
T  2796153 tgctacttctatactaatttatttatgaaagatcttaattgagaatcacatatgcatctaacttgagcaatttatttcattaaaaaaaaaaggtctataa 2796252  T
Q  98 caagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttat 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2796253 caagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaatacgttgtaatcaactttat 2796327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 18393659 - 18393581
Alignment:
Q  93 tataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  18393659 tataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgttgtaatcaacttta 18393581  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 27401840 - 27401955
Alignment:
Q  56 atctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacac 155  Q
    |||||||||||| |||||||||||||       | | ||||||||| |||||||| |||||||||||||||||||||||||||| |||| |   ||| ||    
T  27401840 atctaacttgagcaatttatttcattaaaaaaagttatataacaagatacaatagaatttggcctttatttatccatctactattgaaagaaaaaaaaac 27401939  T
Q  156 gttgtaatcaacttta 171  Q
    ||||||||||||||||    
T  27401940 gttgtaatcaacttta 27401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 1226113 - 1226187
Alignment:
Q  96 aacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    |||||| ||| | ||||||||  |||||||||| ||||||||||| ||||||||||| | ||||||||||||||||    
T  1226113 aacaagataccagagtatttgatctttatttattcatctactatc-aaaaatttaaaaatgttgtaatcaacttta 1226187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 2796835 - 2796877
Alignment:
Q  181 gttgatcaagattttccgcacgtctttaactcttgaatatact 223  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||    
T  2796835 gttgatcaacattttcctcacgtcttcaactcttgaatatact 2796877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 17651268 - 17651391
Alignment:
Q  48 acatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaat 147  Q
    ||||||| |||||||||||| |||||||||||||       | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||     
T  17651268 acatatgcatctaacttgagcaatttatttcattacaagaagttctataacaagttacaataatatttggcctttatttatccatctactattgaaaaac 17651367  T
Q  148 ttaaacacgttgtaatcaacttta 171  Q
    ||||| ||||||||||||||||||    
T  17651368 ttaaatacgttgtaatcaacttta 17651391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 44650072 - 44649997
Alignment:
Q  96 aacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    |||||| ||| |||| ||||| ||||||||||| ||||||||||| ||||| ||||| | ||||||||||||||||    
T  44650072 aacaagataccatagaatttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaacttta 44649997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 4748224 - 4748110
Alignment:
Q  57 tctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacg 156  Q
    ||||||||||| |||||||||||||       | |||| |||||||||| |||||||||| ||||||||||| ||||| |||| ||| ||  |||| | |    
T  4748224 tctaacttgagcaatttatttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatg 4748125  T
Q  157 ttgtaatcaacttta 171  Q
     ||||||||||||||    
T  4748124 ctgtaatcaacttta 4748110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 3387707 - 3387787
Alignment:
Q  91 tctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||||||||| || ||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  3387707 tctataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaacttta 3387787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 16426441 - 16426564
Alignment:
Q  48 acatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaat 147  Q
    ||||||| |||||||||||| |||||| ||||||       | |||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||    
T  16426441 acatatgcatctaacttgagcaatttacttcattaaaacaagttctataacaaattacaatagtatttggcctttatttatctatctattattgaaaaat 16426540  T
Q  148 ttaaacacgttgtaatcaacttta 171  Q
    |||||  |  ||||||||||||||    
T  16426541 ttaaatgcactgtaatcaacttta 16426564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 50127313 - 50127210
Alignment:
Q  48 acatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaat 147  Q
    ||||||| |||||||||||  |||||||||||||       | ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  50127313 acatatgcatctaacttgaacaatttatttcattaaataaagttctataacaagatacaatagtatttggcctttattt-ttcatctactatcgaaaaat 50127215  T
Q  148 ttaaa 152  Q
    |||||    
T  50127214 ttaaa 50127210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 3954967 - 3955082
Alignment:
Q  56 atctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacac 155  Q
    |||||||||||| |||||||||||||       | |||| || ||| ||| || ||||||| |||||||||||||||||||||||||||||  |||| ||    
T  3954967 atctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcgtatttgacctttatttatccatctactatcgaaaaagctaaaaac 3955066  T
Q  156 gttgtaatcaacttta 171  Q
    ||||||||||||||||    
T  3955067 gttgtaatcaacttta 3955082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 48632693 - 48632613
Alignment:
Q  91 tctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    |||| |||||| ||| |||||||||| ||||||||||| | ||||||||| |||||  |||| ||||||||||||||||||    
T  48632693 tctaaaacaagataccatagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgttgtaatcaacttta 48632613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 209241 - 209321
Alignment:
Q  91 tctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||||||||  ||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  209241 tctataacaaaatacaacaatatttggcctttatttatccatctacaatcgaaaaatttaaaaacgttgtaataaacttta 209321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 2602143 - 2602221
Alignment:
Q  93 tataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  2602143 tataacaagatacaatagtatttaccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 2602221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 33234962 - 33234886
Alignment:
Q  93 tataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||| || | ||||||||||||||||    
T  33234962 tataacaagatacaatagtatttgacctt-atttatccatctactatcg-aaaatttcaaaatgttgtaatcaacttta 33234886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 447 - 369
Alignment:
Q  91 tctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttt 170  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||| ||| |||||| ||||||||||    
T  447 tctataacaagatacaatagtatttgacctttatttatccatctgctatcg-aaaattgaaatacgttggaatcaacttt 369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 9729969 - 9729906
Alignment:
Q  108 tagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  9729969 tagtatttggactttatttatccacctactatcgaaaaatttaaatgcgttgtaatcaacttta 9729906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 27993911 - 27994015
Alignment:
Q  48 acatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaat 147  Q
    ||||||| || ||||||||| |||||||||||||       | ||||||||||| |||||||| | |||  |||||||||||||||||| ||||||||||    
T  27993911 acatatgcatttaacttgagcaatttatttcattaaataaagttctataacaagatacaatagcaattgatctttatttatccatctaccatcgaaaaat 27994010  T
Q  148 ttaaa 152  Q
    |||||    
T  27994011 ttaaa 27994015  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 11809386 - 11809308
Alignment:
Q  93 tataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||||||| |||||||||||||||||||||||  | |||||||  || ||||||||||| | ||||||||||| ||||    
T  11809386 tataacaagatacaatagtatttggcctttattacttcatctaccgtcaaaaaatttaaaaaggttgtaatcaaattta 11809308  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 25445505 - 25445549
Alignment:
Q  103 tacaatagtatttggccttt-atttatccatctactatcgaaaaa 146  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  25445505 tacaatagtatttggccttttatttatccatctactatcgaaaaa 25445549  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 32716623 - 32716562
Alignment:
Q  91 tctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaa 152  Q
    |||| |||||| ||||||||||||||  |||||||||| |||| |||||||||||| |||||    
T  32716623 tctaaaacaagatacaatagtatttgatctttatttattcatccactatcgaaaaagttaaa 32716562  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 37338857 - 37338793
Alignment:
Q  107 atagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    |||||||||| ||||||||||| ||||||||||| ||||| ||||| | ||| | ||||||||||    
T  37338857 atagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaacttta 37338793  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 48598363 - 48598441
Alignment:
Q  93 tataacaagttacaatagtatttggcctttatttatccatcta-ctatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||||| | |||||||||||||| |||||||||||||| |||  |||| ||||||| ||| ||||||||| ||||||||    
T  48598363 tataacacgatacaatagtatttgacctttatttatcca-ctatatatcaaaaaattaaaaaacgttgtaaccaacttta 48598441  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 6439797 - 6439871
Alignment:
Q  97 acaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||| ||| |||||||||| | | ||||||| || ||||||||||||||  |||| | ||||||||||||||||    
T  6439797 acaagatacgatagtatttgacatctatttattcaactactatcgaaaaagataaaaatgttgtaatcaacttta 6439871  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 32593896 - 32593953
Alignment:
Q  109 agtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaa 166  Q
    ||||||| ||||||||||||||||||||| || |||||||||||   |||||||||||    
T  32593896 agtatttagcctttatttatccatctactctcaaaaaatttaaatgtgttgtaatcaa 32593953  T

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Target: scaffold0325 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 12947 - 13010
Alignment:
Q  108 tagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 171  Q
    ||||||||| | ||||||||| ||||||||||| |||||  |||| || |||||||||||||||    
T  12947 tagtatttgacatttatttattcatctactatcaaaaaagctaaaaacattgtaatcaacttta 13010  T

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