View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15790_high_1 (Length: 472)
Name: NF15790_high_1
Description: NF15790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15790_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 455
Target Start/End: Original strand, 3531936 - 3532371
Alignment:
| Q |
20 |
cataaagcccaatccaagtccaccccagcaagataagctaacatacaagataagaatctttgattcttgttatccatatcagtcatgtctaaaccaaatt |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3531936 |
cataaagcccaatccaagtccaccccagcaagataagctaacatacatgacaagaatctttgattcttgtcatccatatcagtcatgtctaaaccaaatt |
3532035 |
T |
|
| Q |
120 |
cactcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacatttttggttcaatggttt |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532036 |
cactcataaccaatggattagggttagaaccactcattagaaatccagccctatcattcaatccattcattacattggcacatttttggttcaatggttt |
3532135 |
T |
|
| Q |
220 |
cacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttgttttcaag |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3532136 |
cacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaag |
3532235 |
T |
|
| Q |
320 |
aagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgcc |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532236 |
aagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgcc |
3532335 |
T |
|
| Q |
420 |
aactgcttatgttttgacttggacctcttagttcat |
455 |
Q |
| |
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|| || ||||||||||| ||||||||||||||||| |
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| T |
3532336 |
aattgtctatgttttgacctggacctcttagttcat |
3532371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 455
Target Start/End: Original strand, 3527497 - 3527944
Alignment:
| Q |
20 |
cataaagcccaatccaagtccaccccagcaagataagctaacatacaagataagaatctttgatt------------cttgttatccatatcagtcatgt |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| ||| ||| |||||| || |
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| T |
3527497 |
cataaagcccaatccaagtcaaccccagcaagataagctaacatacatgacaagaatctttgattgaatgtttgattcttgtcatcaatagcagtcaagt |
3527596 |
T |
|
| Q |
108 |
ctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacatttttg |
207 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |||||||||| |
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| T |
3527597 |
cagcaccaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacattagcacatttttt |
3527696 |
T |
|
| Q |
208 |
gttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagagga |
307 |
Q |
| |
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||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3527697 |
gttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagagga |
3527796 |
T |
|
| Q |
308 |
tttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctca |
407 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3527797 |
tttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaactgttgttgctccttggctca |
3527896 |
T |
|
| Q |
408 |
tgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3527897 |
tgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
3527944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 23 - 455
Target Start/End: Original strand, 3549220 - 3549656
Alignment:
| Q |
23 |
aaagcccaatccaagtccaccccagcaagataagctaacatacaagataagaatctttgattcttgttatccatatcagtcatgtctaaaccaaattcac |
122 |
Q |
| |
|
||||||||||| || ||||| ||| |||||||||| || ||||| || || |||| ||||| | || ||| |||| |||||| | |||||||||| |
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|
| T |
3549220 |
aaagcccaatctaaatccactccaccaagataagccaaaatacatgacaaatatctctgattttggtcatctatattttccatgtccataccaaattcag |
3549319 |
T |
|
| Q |
123 |
tcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattg----gcacatttttggttcaatggtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||||| |||| ||||| |
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|
| T |
3549320 |
tcataaccaatggattagggttagaaccactcatgagaaaccctgccttgtcattcaatccattcattacattaattagcacattttttattcactggtt |
3549419 |
T |
|
| Q |
219 |
tcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttgttttcaa |
318 |
Q |
| |
|
| |||||||||| ||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| | | |||||||| ||||| ||||| |
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|
| T |
3549420 |
gctcaatccaatcttttggtgaccctattgatcatgcataggaatgtacttcatacaccaatttgtctcctatgttaacatttagaggctttgtcttcaa |
3549519 |
T |
|
| Q |
319 |
gaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgc |
418 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||| || | | |
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|
| T |
3549520 |
gaagcttaaatcagtgtcataatttaagccagaaacaaaaactagaacatttggatttgctttgtggactgttgttactccttggctcatgtatttgtac |
3549619 |
T |
|
| Q |
419 |
caactgcttatgttttgacttggacctcttagttcat |
455 |
Q |
| |
|
||| || ||||||||| |||||||| |||||||| |
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|
| T |
3549620 |
caattgtcattgttttgacctggacctcgtagttcat |
3549656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 26 - 455
Target Start/End: Original strand, 3554814 - 3555243
Alignment:
| Q |
26 |
gcccaatccaagtccaccccagcaagataagctaacatacaagataagaatctttgattcttgttatccatatcagtcatgtctaaaccaaattcactca |
125 |
Q |
| |
|
||||||||||| ||||| || ||||||| || ||||||||||| |||||| ||| |||| ||| | | ||| ||||| | |||||||||||||| |
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| T |
3554814 |
gcccaatccaaatccacacctacaagatatgccaacatacaagacaagaatttttcattcatgtcagtcttattttccatgttgataccaaattcactca |
3554913 |
T |
|
| Q |
126 |
taaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacatttttggttcaatggtttcacaat |
225 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||| |||||||||| ||||||||||| | |
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|
| T |
3554914 |
taaccaatggtttagggttagaaccactcatgagaaaccctgccttatcattcaaattattcattacattagcacattttttgttcaatggttgcttgtc |
3555013 |
T |
|
| Q |
226 |
ccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttgttttcaagaagctt |
325 |
Q |
| |
|
|||||| || || |||| ||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||| ||||| |||||||||||| |
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|
| T |
3555014 |
ccaatcacttcgttccccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttgtcttcaagaagctt |
3555113 |
T |
|
| Q |
326 |
aaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgc |
425 |
Q |
| |
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|||||||||||||| || |||||||||||||| |||||||||| ||||||| |||| ||||| ||||| |||||||||||||||||||| |||||| || |
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|
| T |
3555114 |
aaatcagtgtcataatttaagccagaaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggctcatgtacttgtgccaattgt |
3555213 |
T |
|
| Q |
426 |
ttatgttttgacttggacctcttagttcat |
455 |
Q |
| |
|
|| |||||| |||||||||||||||||| |
|
|
| T |
3555214 |
tttcgttttgttttggacctcttagttcat |
3555243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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