View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15790_high_2 (Length: 450)
Name: NF15790_high_2
Description: NF15790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15790_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 88 - 355
Target Start/End: Complemental strand, 11227519 - 11227252
Alignment:
| Q |
88 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaattactct |
187 |
Q |
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| T |
11227519 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaactactct |
11227420 |
T |
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| Q |
188 |
aacataaaattagcatcttcatcactacagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgacatttggct |
287 |
Q |
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| T |
11227419 |
aacatgaaattagcatcttcatcactacagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgatatttggct |
11227320 |
T |
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| Q |
288 |
cttgttcattgtcatcttcttgcagtaattgcaagtcttctatgttctccacagtttgctcacaaaaa |
355 |
Q |
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| T |
11227319 |
cttgttcattgtcatcttcttgcagtaattgcaagtcttctatgttctccacagtttgctcacaaaaa |
11227252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 10128187 - 10128093
Alignment:
| Q |
88 |
gtacaaagttcataaaccttaattgagttgaaaagaacaata--aactatgacttatagcttattagaaaagcacaaaatgttcatataattaaa |
180 |
Q |
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| T |
10128187 |
gtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttcatataattaaa |
10128093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11227606 - 11227574
Alignment:
| Q |
1 |
acaatttgctaaaaaatgctaaaacatggaatg |
33 |
Q |
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| T |
11227606 |
acaatttgctaaaaaatgctaaaacatggaatg |
11227574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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