View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15790_high_3 (Length: 382)
Name: NF15790_high_3
Description: NF15790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15790_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 10661491 - 10661856
Alignment:
| Q |
12 |
gattatactcctgataatctagggagttcagtctgaaagtaagtaaaatctgacaaatgattgttcagccaaaattcaaactcagactctactgaatgat |
111 |
Q |
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| T |
10661491 |
gattagactcttgataatct--ggagttcagtctgaaagtaagtaaaatctgacaaatgattgttcagccaaaattcaaactcagactctactgaatgat |
10661588 |
T |
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| Q |
112 |
tcacccttaactgaaactcattaaccacttaat-----------taatacgctaatcatatttaatcgtgatgtcgtataacatgttattttctaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10661589 |
tcacccttaactgaaactcattaaccacttcataatcacttgattaatacgctaatcatatttaatcgtgatgtcgtataacatgttattttctaaaata |
10661688 |
T |
|
| Q |
201 |
gaaactcaaatatcaatttgatcaaatatgcttatatgaaatttctattgtgtcacttcataatcatttaactaaaagnnnnnnntgcttatatgaattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10661689 |
gaaactcaaatatcaatttgatcaaatatgcttatatgaaatttctattgtgtcacttcataatcatttaactaaaagaaaaaaatgcttatatgaattc |
10661788 |
T |
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| Q |
301 |
cttggctagttaattacctgtgtgactagagcataaagaggcaaagtgacatagctacatagaaattg |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10661789 |
cttggctagttaattacctgtgtgactagagcataaagaggcaaagtgacatagctacatagaaattg |
10661856 |
T |
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