View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15790_low_10 (Length: 203)

Name: NF15790_low_10
Description: NF15790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15790_low_10
NF15790_low_10
[»] chr5 (2 HSPs)
chr5 (69-137)||(37606024-37606092)
chr5 (94-136)||(30891764-30891806)
[»] chr6 (1 HSPs)
chr6 (69-137)||(31559483-31559551)
[»] chr7 (2 HSPs)
chr7 (67-133)||(27656844-27656910)
chr7 (158-191)||(33602495-33602528)
[»] chr4 (1 HSPs)
chr4 (99-136)||(7453567-7453604)


Alignment Details
Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 37606024 - 37606092
Alignment:
Q  69 ataagtattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctg 137  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  37606024 ataagtattgagtaacagtgtatggtgtcatatttgtgtttgtattattgtgtttacttatcattcctg 37606092  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 30891806 - 30891764
Alignment:
Q  94 tgtcatttttgtgtttgtatttttgtgtttacttatcattcct 136  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  30891806 tgtcgtttttgtgtttgtatttttgtgttcacttatcattcct 30891764  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 31559551 - 31559483
Alignment:
Q  69 ataagtattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctg 137  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  31559551 ataagtattgagtaacagtgtatggtgtcatatttatgtttgtattattgtgtttacttatcattcctg 31559483  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 27656910 - 27656844
Alignment:
Q  67 atataagtattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcatt 133  Q
    |||||||||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  27656910 atataagtattgaggaacagtctatggtatcatttttgtgtttgtatttttgtgtttacttatcatt 27656844  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 33602528 - 33602495
Alignment:
Q  158 aaaaacatatttaatcgtttaatatttcatttca 191  Q
    ||||||||||||||||||||||||||||||||||    
T  33602528 aaaaacatatttaatcgtttaatatttcatttca 33602495  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 7453604 - 7453567
Alignment:
Q  99 tttttgtgtttgtatttttgtgtttacttatcattcct 136  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7453604 tttttgtgtttgtatttttgtgttcacttatcattcct 7453567  T

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