View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15790_low_3 (Length: 386)

Name: NF15790_low_3
Description: NF15790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15790_low_3
NF15790_low_3
[»] chr3 (13 HSPs)
chr3 (18-252)||(2483843-2484077)
chr3 (34-252)||(7340176-7340381)
chr3 (99-252)||(7438889-7439039)
chr3 (310-373)||(2484135-2484198)
chr3 (310-373)||(7340057-7340120)
chr3 (18-92)||(7439075-7439149)
chr3 (25-93)||(17621592-17621661)
chr3 (25-93)||(17628775-17628844)
chr3 (148-197)||(2632067-2632116)
chr3 (310-373)||(7438774-7438836)
chr3 (25-82)||(2494128-2494186)
chr3 (46-87)||(2643356-2643397)
chr3 (143-187)||(7437756-7437800)
[»] chr6 (1 HSPs)
chr6 (143-252)||(18756698-18756803)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 2483843 - 2484077
Alignment:
Q  18 gtttttgtagagactgagagagaataagtcatatcttggaaacttcaattttcccatgacagtttcggattaacatggctgttgacataattgctttatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2483843 gtttttgtagagactgagagagaataagtcatatcttggaaacttcaattttcccatgacagtttgggattaacatggctgttgacataattgctttatt 2483942  T
Q  118 cactagtctatcatgaatacaagataatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggatagtaagagtttcgttgggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2483943 cactagtctatcatgaatacaagataatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggataataagagtttcgttgggt 2484042  T
Q  218 ttaatcatcgaacgagacccacaagataggaatac 252  Q
    |||||||||||||||||||||||||||||||||||    
T  2484043 ttaatcatcgaacgagacccacaagataggaatac 2484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 7340381 - 7340176
Alignment:
Q  34 agagagaataagtcatatcttggaaacttcaattttcccatgacagtttcggattaacatggctgttgacataattgctttattcactagtctatcatga 133  Q
    |||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  7340381 agagagaataagtcatatcttgaaaacttcaattttcccatcatagtttgggattaatatggctattgacataattgctttattcactagtctagtatga 7340282  T
Q  134 atacaagataatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggatagtaagagtttcgttgggtttaatcatcgaacgag 233  Q
    || |||||||||||||||||||||||||||||             || |||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  7340281 atgcaagataatagttaatgtatatatggctc-------------gtagcatctccacttaggataataagagttttgttgggtttaatcatcgaacgag 7340195  T
Q  234 acccacaagataggaatac 252  Q
    |||||||||||||||||||    
T  7340194 acccacaagataggaatac 7340176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 7439039 - 7438889
Alignment:
Q  99 ttgacataattgctttattcactagtctatcatgaatacaagataatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggat 198  Q
    |||||||||||||||||||||||||||||  |||||| |||| ||   ||| ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  7439039 ttgacataattgctttattcactagtctagtatgaatgcaaggta---gtttatgtatatatggctcataggacatgtgagttgcatctctacttaggat 7438943  T
Q  199 agtaagagtttcgttgggtttaatcatcgaacgagacccacaagataggaatac 252  Q
    | || ||||||  ||||||||||| || ||| ||||||||||||||||||||||    
T  7438942 aataggagttttattgggtttaattattgaatgagacccacaagataggaatac 7438889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 2484135 - 2484198
Alignment:
Q  310 aatattaagtaacctttctagcaatgctagtttagtattgctagatgatttgactgtcttgcct 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2484135 aatattaagtaacctttctagcaatgctagtttagtattgctagatgatttgactgtcttgcct 2484198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 7340120 - 7340057
Alignment:
Q  310 aatattaagtaacctttctagcaatgctagtttagtattgctagatgatttgactgtcttgcct 373  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  7340120 aatattaagtaacctttttagcaatgctagtttagtattgctagatgatttgactctcttgcct 7340057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 7439149 - 7439075
Alignment:
Q  18 gtttttgtagagactgagagagaataagtcatatcttggaaacttcaattttcccatgacagtttcggattaaca 92  Q
    |||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  7439149 gtttttctagagattgagagagaataagtcaaatcttgaaaacttcaattttcccatgacagtttgggattaaca 7439075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 17621592 - 17621661
Alignment:
Q  25 tagagactgagagagaata-agtcatatcttggaaacttcaattttcccatgacagtttcggattaacat 93  Q
    |||||| || ||||||||| ||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  17621592 tagagattgtgagagaatagagtcatatcttggaaacctcaattttccaatgacagtttgggattaacat 17621661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 17628775 - 17628844
Alignment:
Q  25 tagagactgagagagaata-agtcatatcttggaaacttcaattttcccatgacagtttcggattaacat 93  Q
    |||||| || ||||||||| ||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  17628775 tagagattgtgagagaatagagtcatatcttggaaacctcaattttccaatgacagtttgggattaacat 17628844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 2632067 - 2632116
Alignment:
Q  148 ttaatgtatatatggctcatagtacatgtgagttgcatctccacttagga 197  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| ||||    
T  2632067 ttaaagtatatatggctcatagtacaagtgagttgcatctccactcagga 2632116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 7438836 - 7438774
Alignment:
Q  310 aatattaagtaacctttctagcaatgctagtttagtattgctagatgatttgactgtcttgcct 373  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| |||||| | | ||||||||    
T  7438836 aatattaagtaacctt-ctagcaatgctagtttagtattggtagctgatttcaatctcttgcct 7438774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 2494128 - 2494186
Alignment:
Q  25 tagagactgagagagaata-agtcatatcttggaaacttcaattttcccatgacagttt 82  Q
    |||||| || ||||||||| |||||||||||| |||||||| ||||||||||| |||||    
T  2494128 tagagattgggagagaatatagtcatatcttgaaaacttcagttttcccatgatagttt 2494186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 2643397 - 2643356
Alignment:
Q  46 tcatatcttggaaacttcaattttcccatgacagtttcggat 87  Q
    |||||||||| |||||||| ||||||||||||||||| ||||    
T  2643397 tcatatcttgaaaacttcagttttcccatgacagtttgggat 2643356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 7437800 - 7437756
Alignment:
Q  143 aatagttaatgtatatatggctcatagtacatgtgagttgcatct 187  Q
    |||||||||||||||||||| |||||||||| |||  ||||||||    
T  7437800 aatagttaatgtatatatggatcatagtacaggtgcattgcatct 7437756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 18756698 - 18756803
Alignment:
Q  143 aatagttaatgtatatatggctcatagtacatgtgagttgcatctccacttaggatagtaagagtttcgttgggtttaatcatcgaacgagacccacaag 242  Q
    |||| |||| |||||| | |||||||||||| || ||||||||||| | |||||||| || |||||     ||| ||||| ||||||||| ||| || ||    
T  18756698 aataattaacgtatatgtagctcatagtacaagtcagttgcatctctatttaggataatatgagttg----gggattaattatcgaacgaaaccaacgag 18756793  T
Q  243 ataggaatac 252  Q
    ||||||||||    
T  18756794 ataggaatac 18756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University