View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15790_low_7 (Length: 250)
Name: NF15790_low_7
Description: NF15790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15790_low_7 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 37183189 - 37182954
Alignment:
| Q |
18 |
ataagggttgggttataatgaatgatggcttctcttcacctttatatatagtggacggttgcttaacacgcaagctacttcctatttcatatc---nnnn |
114 |
Q |
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| T |
37183189 |
ataagggttgggttataatgaatgatggcttctcttcacctttatatatagtggacggttgcttaaaacgcaagctatttcctatttcatatcttttttt |
37183090 |
T |
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| Q |
115 |
nnnngttacactagcggaaatccgctcttttttgctacatgctacttccttaannnnnnnnaacagatttttgagaaacctttctaaagtatgaaacctt |
214 |
Q |
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| T |
37183089 |
ttttgttacactagcggaaatccgctcttttttgctacatgctacttccttaattttctttaacagatttttgaaaaacctttctaaagtatgaaacctt |
37182990 |
T |
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| Q |
215 |
taataacctaaattatcaaaaaataattaaatagtt |
250 |
Q |
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| T |
37182989 |
taataacctaaattatcaaaaaataaataaatagtt |
37182954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 37085276 - 37085466
Alignment:
| Q |
30 |
ttataatgaatgatggcttctcttcacctt--tatatatagtggacggttgcttaacacgcaagctacttcctatttcatatcnnnnnnnngttacacta |
127 |
Q |
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| T |
37085276 |
ttataatgaatgaatgattctcttcacctttatatatatagtgcaatgttgcttaacatgcacgctgcttcctatttcttatc--ttttttgttacacta |
37085373 |
T |
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| Q |
128 |
gcggaaatccgctc--ttttttgctacatgctacttccttaannnnnnnnaacagatttttgagaaacctttctaaagtatgaaacctttaata |
219 |
Q |
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| T |
37085374 |
gcggaaatctgctcttttttttgttacatgctacttccttaattttctttaacaaatttttta-aaacctttctaaaataggaaacctttaata |
37085466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 37076525 - 37076444
Alignment:
| Q |
29 |
gttataatgaatgatggcttctcttcacctttatatatagtggacggttgcttaacacgcaagctacttcctatttcatatc |
110 |
Q |
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| T |
37076525 |
gttattatggatgatggcttctctcgacctttatttatggttcaccgttgcttaatacacacgctacttcctatttcatatc |
37076444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 37076406 - 37076358
Alignment:
| Q |
119 |
gttacactagcggaaatccgctcttttttgctacatgctacttccttaa |
167 |
Q |
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| T |
37076406 |
gttacactagcggaaatccgctcctttttgttacacgctgcatccttaa |
37076358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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