View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15790_low_8 (Length: 216)

Name: NF15790_low_8
Description: NF15790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15790_low_8
NF15790_low_8
[»] chr7 (5 HSPs)
chr7 (18-208)||(38095404-38095594)
chr7 (19-180)||(26788944-26789105)
chr7 (114-202)||(2507407-2507495)
chr7 (120-165)||(10350669-10350714)
chr7 (114-158)||(149574-149618)
[»] chr2 (4 HSPs)
chr2 (18-197)||(26179516-26179695)
chr2 (74-202)||(2757739-2757867)
chr2 (124-202)||(2758461-2758539)
chr2 (99-165)||(38356880-38356946)
[»] chr3 (5 HSPs)
chr3 (38-208)||(47956012-47956182)
chr3 (63-163)||(35898871-35898970)
chr3 (63-163)||(18753730-18753830)
chr3 (124-208)||(47955220-47955304)
chr3 (109-163)||(35899643-35899697)
[»] chr8 (6 HSPs)
chr8 (57-128)||(32019827-32019898)
chr8 (114-202)||(25988956-25989044)
chr8 (114-202)||(25989848-25989936)
chr8 (123-183)||(30794-30854)
chr8 (123-207)||(37767502-37767586)
chr8 (127-202)||(32018194-32018269)
[»] chr1 (5 HSPs)
chr1 (64-202)||(38002940-38003078)
chr1 (64-202)||(38003527-38003665)
chr1 (122-165)||(50900555-50900598)
chr1 (123-165)||(19986894-19986936)
chr1 (145-185)||(20291158-20291198)
[»] chr4 (1 HSPs)
chr4 (94-193)||(11960095-11960194)
[»] chr5 (2 HSPs)
chr5 (94-164)||(39985385-39985456)
chr5 (117-185)||(34597638-34597706)
[»] chr6 (1 HSPs)
chr6 (122-202)||(9880574-9880654)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 38095404 - 38095594
Alignment:
Q  18 gatccttccattaatccatttagtttgttagacaaggaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaata 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38095404 gatcctttcattaatccatttagtttgttagacaaggaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatatgaata 38095503  T
Q  118 aaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataatctaccc 208  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||    
T  38095504 aaaattaagggaggtttgcgtttagtttaaaactagagggggtgtttgtattatttaagaaaacctcaaggaatgtgagtgtaatttaccc 38095594  T

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Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 26788944 - 26789105
Alignment:
Q  19 atccttccattaatccatttagtttgttagacaaggaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataa 118  Q
    ||||||||||||||||||| |||||||| ||||| ||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26788944 atccttccattaatccattgagtttgttcgacaatgaagctgtgttaacacagaactaacagtgttacatgataggggtggtgtttgtagatttgaataa 26789043  T
Q  119 aaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaa 180  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||   ||||||||||||    
T  26789044 aaattaagggaggtttgtgtttagttaaaaactagagggggtgtttgtgctatttaagaaaa 26789105  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 2507495 - 2507407
Alignment:
Q  114 aataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 202  Q
    ||||||| ||||||||| || |||||||||||||||||||| ||||| || || || |||||||||||||||| | |||||||| ||||    
T  2507495 aataaaacttaagggagattagtgtttagtttaaaattagatggggtattggcgttttttaagaaaacctcaaaggaggtgagtgtaat 2507407  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 10350714 - 10350669
Alignment:
Q  120 aattaagggaggtttgtgtttagtttaaaattagagggggtgtttg 165  Q
    |||||||||||||  ||||| ||||||||| |||||||||||||||    
T  10350714 aattaagggaggtgggtgttaagtttaaaactagagggggtgtttg 10350669  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 149574 - 149618
Alignment:
Q  114 aataaaaattaagggaggtttgtgtttagtttaaaattagagggg 158  Q
    ||||||| | ||||||||||||||||||||| |||| ||||||||    
T  149574 aataaaattcaagggaggtttgtgtttagttgaaaactagagggg 149618  T

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Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 26179516 - 26179695
Alignment:
Q  18 gatccttccattaatccatttagtttgttagacaaggaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaata 117  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26179516 gatccttccattaatacatttagcttgttagacaaggaagcttagttaacagagaactaacagtgttacatgataggggtggtgtttgtagatttgaata 26179615  T
Q  118 aaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagt 197  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||    
T  26179616 aaaataaagggaggtttgtgtttagtttaaaactagagggggtgtttgtgttatttaagaaaacctcaagggaggtgagt 26179695  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 2757867 - 2757739
Alignment:
Q  74 ctaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattattt 173  Q
    ||||||||||||||||||||||| |||| ||||| |||| |||||||||||| ||| ||  ||||||| || ||||||||||||| |||| |  ||||||    
T  2757867 ctaacggtgttacatgataggggaggtgcttgtaaatttaaataaaaattaatggatgtaagtgtttaattaaaaattagaggggatgttagtgttattt 2757768  T
Q  174 aagaaaacctcaaggaaggtgagtataat 202  Q
    ||||| ||||||||| |||||||| ||||    
T  2757767 aagaagacctcaagggaggtgagtgtaat 2757739  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 2758461 - 2758539
Alignment:
Q  124 aagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 202  Q
    |||||||||| |||||||||||||||||||||||| |||| |  ||||||||||| |||| |||| |||||||| ||||    
T  2758461 aagggaggttagtgtttagtttaaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaat 2758539  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 38356946 - 38356880
Alignment:
Q  99 gtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttg 165  Q
    ||||||||| |||||| ||||| ||||||||||||  ||| |  ||||||| |||||||||||||||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttg 38356880  T

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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 47956012 - 47956182
Alignment:
Q  38 tagtttgttagacaaggaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtg 137  Q
    |||||| || |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||    
T  47956012 tagttttttcgacaaggaagctaagttaacagagaaccaacggtgttacatgacaggggtggtgtttgtagatttgattaaaaattaagggagattagtg 47956111  T
Q  138 tttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataatctaccc 208  Q
    |||||||| ||| ||||||||||||| |   |||||||||| ||||||||  |||||||| |||| |||||    
T  47956112 tttagttttaaactagagggggtgttagtgctatttaagaagacctcaagagaggtgagtgtaatttaccc 47956182  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 35898970 - 35898871
Alignment:
Q  63 ttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgt 162  Q
    |||||||||| ||||||||| ||  ||| | ||| |||| ||||  ||||||||||||| ||||||||||| ||||| |||| |||| ||||||||||||    
T  35898970 ttaacagaga-ctaacggtgctaagtgaaaagggaggtggttgtctatttgaataaaaaataagggaggttagtgttgagttaaaaaatagagggggtgt 35898872  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 18753730 - 18753830
Alignment:
Q  63 ttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaat-taagggaggtttgtgtttagtttaaaattagagggggtg 161  Q
    |||||||||| ||||||||||||  ||| | ||| |||| ||||  |||||||||||||  ||||||||||| ||||| |||| |||| |||||||||||    
T  18753730 ttaacagaga-ctaacggtgttaagtgaaaagggaggtggttgtctatttgaataaaaaaataagggaggttagtgttgagttaaaaaatagagggggtg 18753828  T
Q  162 tt 163  Q
    ||    
T  18753829 tt 18753830  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 47955304 - 47955220
Alignment:
Q  124 aagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataatctaccc 208  Q
    ||||||||||  |||||| || |||| ||||||||||||| |   ||||||||||||| |||||| |||||||| |||| |||||    
T  47955304 aagggaggttaatgtttatttcaaaactagagggggtgttagtgctatttaagaaaacttcaagggaggtgagtgtaatttaccc 47955220  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 35899643 - 35899697
Alignment:
Q  109 atttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtt 163  Q
    ||||| |||| |||||||||||||| ||||| |||| |||| |||||||||||||    
T  35899643 atttgtataacaattaagggaggttagtgttgagttaaaaactagagggggtgtt 35899697  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 32019827 - 32019898
Alignment:
Q  57 gcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaaggg 128  Q
    ||||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||||| ||||||||    
T  32019827 gcttagttaacagagaactaacggtgttatataataggggaggcgtttgtagatttgaataaacattaaggg 32019898  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 25989044 - 25988956
Alignment:
Q  114 aataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 202  Q
    ||||||| ||||||||||||||||||||||  |||| ||||||||||||| |  || ||||||||||||||| || |||| ||| ||||    
T  25989044 aataaaatttaagggaggtttgtgtttagtagaaaactagagggggtgttagggttgtttaagaaaacctcatggtaggtaagtgtaat 25988956  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 25989848 - 25989936
Alignment:
Q  114 aataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 202  Q
    ||||||| ||||||||||||||||||||||| |||| || |||||||||| |  || |||||||||| |  |||| |||||||| ||||    
T  25989848 aataaaatttaagggaggtttgtgtttagttgaaaactaaagggggtgttagtgttttttaagaaaatcataagggaggtgagtgtaat 25989936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 30794 - 30854
Alignment:
Q  123 taagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacct 183  Q
    ||||||||||| ||||||||||||||| || ||||||| |||   ||||||||||||||||    
T  30794 taagggaggttagtgtttagtttaaaactaaagggggtctttttgttatttaagaaaacct 30854  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 37767502 - 37767586
Alignment:
Q  123 taagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataatctacc 207  Q
    |||||||||||| ||||||||| |||| |||||||| ||||||  |||||||| || |||||| || |||| ||| |||| ||||    
T  37767502 taagggaggtttatgtttagttaaaaactagaggggatgtttgtgttatttaacaatacctcaggggaggttagtgtaatttacc 37767586  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 32018269 - 32018194
Alignment:
Q  127 ggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 202  Q
    ||||||| |||||||||| ||||||||||||  |||| |  ||||||||||| ||||||| ||| |||||| ||||    
T  32018269 ggaggttagtgtttagttaaaaattagagggaatgttagtgttatttaagaagacctcaaagaaagtgagtgtaat 32018194  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 38003078 - 38002940
Alignment:
Q  64 taacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtt 163  Q
    |||||||| ||||||  |||||||| | |  || ||||||||| | |||||||||||||||||||||||  ||||||| || |||| |||||||| ||||    
T  38003078 taacagagcactaacaatgttacataacaatggaggtgtttgtcgctttgaataaaaattaagggaggtaagtgtttaattaaaaactagaggggatgtt 38002979  T
Q  164 tgcattatttaagaaaacctcaaggaaggtgagtataat 202  Q
     |   ||||||||||||||| |||| |||||||| ||||    
T  38002978 agtgctatttaagaaaacctaaagggaggtgagtgtaat 38002940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 38003527 - 38003665
Alignment:
Q  64 taacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtt 163  Q
    |||||||| ||| ||| |||||||||||||||| |||| ||||   ||||||||||| |||  ||| ||| |||||||||| |||| |||||||| ||||    
T  38003527 taacagagcactcacgctgttacatgataggggaggtgattgtcactttgaataaaagttataggaagttagtgtttagttaaaaagtagaggggttgtt 38003626  T
Q  164 tgcattatttaagaaaacctcaaggaaggtgagtataat 202  Q
     |   |||||||||| |||| |||| |||||||| ||||    
T  38003627 agtgctatttaagaagaccttaagggaggtgagtgtaat 38003665  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 50900555 - 50900598
Alignment:
Q  122 ttaagggaggtttgtgtttagtttaaaattagagggggtgtttg 165  Q
    |||||||||||| || |||| |||||||||||||||||||||||    
T  50900555 ttaagggaggttagtatttattttaaaattagagggggtgtttg 50900598  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 19986894 - 19986936
Alignment:
Q  123 taagggaggtttgtgtttagtttaaaattagagggggtgtttg 165  Q
    |||||||||||||| |||||||||||| |||||| ||||||||    
T  19986894 taagggaggtttgtatttagtttaaaactagaggaggtgtttg 19986936  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 20291198 - 20291158
Alignment:
Q  145 taaaattagagggggtgtttgcattatttaagaaaacctca 185  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  20291198 taaaactagagggggtgtttgtgttatttaagaaaacctca 20291158  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 11960194 - 11960095
Alignment:
Q  94 gggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggt 193  Q
    ||||||||||| |  ||||||  | ||| ||||||||||||||||||||||||||| |||||||||||||||   |||||||  ||||||||||| ||||    
T  11960194 gggtggtgtttttcaatttgataacaaaataagggaggtttgtgtttagtttaaaactagagggggtgtttgtgctatttaactaaacctcaagggaggt 11960095  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 39985385 - 39985456
Alignment:
Q  94 gggtggtgtttgtagatttga-ataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgttt 164  Q
    |||||||||||||  |||||| | ||||| ||||||||||||||||||||||||||| || |||||||||||    
T  39985385 gggtggtgtttgtcaatttgataaaaaaaataagggaggtttgtgtttagtttaaaactaaagggggtgttt 39985456  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 34597638 - 34597706
Alignment:
Q  117 aaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctca 185  Q
    |||| ||| |||||| | ||||||| |||||||||||||||| ||||||  ||||||||| | ||||||    
T  34597638 aaaacttaggggaggctagtgtttattttaaaattagaggggatgtttgtgttatttaaggagacctca 34597706  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 9880654 - 9880574
Alignment:
Q  122 ttaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 202  Q
    |||||||||||| |||| || ||||||| |||||||||||| |   ||||||||  ||| ||||||| |||||||| ||||    
T  9880654 ttaagggaggttggtgtctattttaaaactagagggggtgtctttgttatttaaagaaaactcaagggaggtgagtgtaat 9880574  T

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