View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15790_low_9 (Length: 213)
Name: NF15790_low_9
Description: NF15790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15790_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 51071854 - 51072033
Alignment:
| Q |
11 |
gtgagatgaacgcgcgagtactgtatacccnnnnnnnncacccctctatctagggttttctcgccgtccacagcacaaaccccattataaatggttagtg |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071854 |
gtgagatgaacgcgcgagtactgtatacccttttttttcacccctctatctagggttttctcgccgtccacagcacaaaccccattataaatggttagtg |
51071953 |
T |
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| Q |
111 |
ataagagccgcacattatcgacacgtggatgtttctcattggatctaattttctctctcctaacattctctttcggtata |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071954 |
ataagagccgcacattatcgacacgtggatgtttctcattggatctaattttctctctcctaacattctctttcggtata |
51072033 |
T |
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Target: chr3; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 50968719 - 50968897
Alignment:
| Q |
11 |
gtgagatgaacgcgcgagtactgtatacccnnnnnnnncacccctctatctagggttttctcgccgtccacagcacaaaccccattataaatggttagtg |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50968719 |
gtgagatgaacgcgcgagtactgtatacccttttttt-cacccctctatctagggttttctcgccgtccacagcacaaaccccattataaatggttagtg |
50968817 |
T |
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| Q |
111 |
ataagagccgcacattatcgacacgtggatgtttctcattggatctaattttctctctcctaacattctctttcggtata |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50968818 |
ataagagccgcacattatcgacacgtggatgtttctcattggatctaattttctctctcctaacattctctttcggtata |
50968897 |
T |
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