View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_high_16 (Length: 320)

Name: NF15791_high_16
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_high_16
NF15791_high_16
[»] chr5 (25 HSPs)
chr5 (11-303)||(16110783-16111075)
chr5 (52-224)||(22118140-22118310)
chr5 (28-226)||(11223355-11223547)
chr5 (48-202)||(31150669-31150820)
chr5 (48-202)||(5600580-5600731)
chr5 (48-202)||(5610226-5610377)
chr5 (28-205)||(24412828-24413001)
chr5 (28-86)||(24244058-24244115)
chr5 (28-86)||(24290682-24290739)
chr5 (28-86)||(33955515-33955572)
chr5 (28-86)||(42732592-42732649)
chr5 (28-205)||(18569039-18569212)
chr5 (28-205)||(22489185-22489358)
chr5 (28-205)||(24422277-24422450)
chr5 (28-205)||(30454216-30454389)
chr5 (28-86)||(13815388-13815445)
chr5 (28-86)||(20834546-20834603)
chr5 (48-86)||(22448364-22448402)
chr5 (28-86)||(30459274-30459331)
chr5 (28-86)||(20036114-20036171)
chr5 (48-86)||(30444863-30444901)
chr5 (168-226)||(33955650-33955708)
chr5 (52-82)||(26652738-26652768)
chr5 (52-82)||(26924323-26924353)
chr5 (44-86)||(37514889-37514931)
[»] scaffold0223 (1 HSPs)
scaffold0223 (44-304)||(27083-27346)
[»] chr1 (10 HSPs)
chr1 (26-226)||(30676767-30676964)
chr1 (28-224)||(5378439-5378632)
chr1 (26-202)||(26906259-26906431)
chr1 (28-86)||(14272033-14272090)
chr1 (28-86)||(14281899-14281956)
chr1 (87-175)||(28310082-28310170)
chr1 (48-86)||(21919465-21919503)
chr1 (28-209)||(40999050-40999228)
chr1 (168-223)||(3471087-3471142)
chr1 (28-86)||(3470952-3471009)
[»] chr3 (22 HSPs)
chr3 (48-202)||(32877870-32878021)
chr3 (48-202)||(17529895-17530046)
chr3 (48-202)||(54624655-54624806)
chr3 (28-86)||(5385805-5385862)
chr3 (123-224)||(7784114-7784215)
chr3 (28-205)||(24794561-24794734)
chr3 (27-86)||(19388879-19388937)
chr3 (35-148)||(24285443-24285553)
chr3 (28-86)||(13328293-13328350)
chr3 (28-86)||(28367668-28367725)
chr3 (28-86)||(28375486-28375543)
chr3 (28-86)||(28383308-28383365)
chr3 (124-226)||(46305680-46305781)
chr3 (34-86)||(28351741-28351792)
chr3 (28-205)||(38529192-38529365)
chr3 (48-202)||(48978670-48978817)
chr3 (48-202)||(48988210-48988357)
chr3 (124-226)||(23487020-23487121)
chr3 (138-224)||(4361634-4361720)
chr3 (124-226)||(5385669-5385770)
chr3 (124-226)||(13328385-13328486)
chr3 (48-86)||(46305608-46305645)
[»] scaffold0269 (1 HSPs)
scaffold0269 (48-202)||(14848-14999)
[»] chr4 (21 HSPs)
chr4 (48-202)||(23622919-23623070)
chr4 (50-164)||(45609487-45609598)
chr4 (170-286)||(41902668-41902782)
chr4 (28-205)||(37059086-37059259)
chr4 (28-205)||(3242302-3242475)
chr4 (28-205)||(54689928-54690101)
chr4 (28-205)||(54699359-54699532)
chr4 (28-86)||(3918182-3918239)
chr4 (48-86)||(20884483-20884521)
chr4 (28-86)||(26812624-26812681)
chr4 (28-86)||(26822091-26822148)
chr4 (124-226)||(50516605-50516706)
chr4 (28-205)||(15842913-15843086)
chr4 (48-86)||(11482430-11482468)
chr4 (168-226)||(20884599-20884657)
chr4 (52-86)||(50516536-50516570)
chr4 (126-286)||(28256166-28256324)
chr4 (168-226)||(11482294-11482352)
chr4 (138-224)||(18125530-18125616)
chr4 (134-226)||(21667752-21667844)
chr4 (134-226)||(21676516-21676608)
[»] chr6 (12 HSPs)
chr6 (48-177)||(11421485-11421611)
chr6 (28-86)||(22066408-22066465)
chr6 (28-205)||(23895631-23895804)
chr6 (28-83)||(23884610-23884664)
chr6 (120-163)||(24564716-24564759)
chr6 (28-86)||(14102423-14102480)
chr6 (168-226)||(22066272-22066330)
chr6 (124-226)||(23884471-23884572)
chr6 (28-85)||(18420668-18420724)
chr6 (26-151)||(12173474-12173595)
chr6 (28-86)||(17512238-17512295)
chr6 (136-205)||(18420551-18420619)
[»] chr8 (28 HSPs)
chr8 (26-209)||(15833946-15834125)
chr8 (28-205)||(20714069-20714242)
chr8 (34-205)||(7789099-7789266)
chr8 (28-86)||(12915574-12915631)
chr8 (28-86)||(18143444-18143501)
chr8 (28-86)||(18233042-18233099)
chr8 (28-86)||(18242493-18242550)
chr8 (28-86)||(18883175-18883232)
chr8 (28-86)||(20030294-20030351)
chr8 (28-86)||(31575426-31575483)
chr8 (28-86)||(42712193-42712250)
chr8 (48-86)||(4843756-4843794)
chr8 (48-86)||(18251944-18251982)
chr8 (28-86)||(20044933-20044990)
chr8 (48-86)||(33592168-33592206)
chr8 (48-86)||(33601807-33601845)
chr8 (50-86)||(25037062-25037098)
chr8 (50-86)||(25051099-25051135)
chr8 (168-226)||(12767610-12767668)
chr8 (52-86)||(12925469-12925503)
chr8 (168-226)||(20030158-20030216)
chr8 (168-226)||(20044797-20044855)
chr8 (124-226)||(42712285-42712386)
chr8 (48-86)||(42896183-42896221)
chr8 (28-79)||(20714417-20714467)
chr8 (168-226)||(12925333-12925391)
chr8 (52-86)||(24634083-24634117)
chr8 (52-149)||(24096113-24096208)
[»] scaffold0021 (3 HSPs)
scaffold0021 (48-186)||(99999-100134)
scaffold0021 (168-226)||(143148-143206)
scaffold0021 (53-86)||(124162-124195)
[»] chr2 (16 HSPs)
chr2 (48-202)||(1800493-1800644)
chr2 (48-202)||(22632402-22632553)
chr2 (28-86)||(35877631-35877688)
chr2 (28-86)||(35885120-35885177)
chr2 (28-86)||(36724833-36724890)
chr2 (28-86)||(3397038-3397095)
chr2 (48-205)||(24022776-24022930)
chr2 (48-205)||(31710500-31710654)
chr2 (48-202)||(1790999-1791146)
chr2 (261-304)||(18578627-18578670)
chr2 (168-226)||(35877495-35877553)
chr2 (168-226)||(35884984-35885042)
chr2 (168-226)||(36724697-36724755)
chr2 (127-179)||(18578711-18578763)
chr2 (124-226)||(3396902-3397003)
chr2 (28-86)||(14273320-14273377)
[»] chr7 (16 HSPs)
chr7 (26-205)||(15174540-15174715)
chr7 (28-226)||(14634793-14634986)
chr7 (28-86)||(11634345-11634402)
chr7 (28-86)||(14644493-14644550)
chr7 (28-86)||(33292192-33292249)
chr7 (48-86)||(9737061-9737099)
chr7 (28-86)||(15947388-15947445)
chr7 (28-86)||(32818111-32818168)
chr7 (28-205)||(7593006-7593179)
chr7 (51-86)||(13874501-13874536)
chr7 (168-226)||(9736925-9736983)
chr7 (124-226)||(14644585-14644686)
chr7 (124-226)||(15947480-15947581)
chr7 (124-226)||(33292284-33292385)
chr7 (26-179)||(4306571-4306719)
chr7 (49-86)||(19352624-19352661)
[»] scaffold0247 (1 HSPs)
scaffold0247 (51-202)||(24593-24741)
[»] scaffold0482 (1 HSPs)
scaffold0482 (34-205)||(3533-3700)
[»] scaffold0206 (2 HSPs)
scaffold0206 (28-86)||(2224-2281)
scaffold0206 (168-226)||(2088-2146)
[»] scaffold0040 (1 HSPs)
scaffold0040 (28-86)||(30838-30895)
[»] scaffold0010 (1 HSPs)
scaffold0010 (28-86)||(257073-257130)
[»] scaffold0028 (2 HSPs)
scaffold0028 (48-205)||(94465-94619)
scaffold0028 (28-205)||(103887-104060)
[»] scaffold0334 (1 HSPs)
scaffold0334 (48-86)||(12582-12620)
[»] scaffold0001 (1 HSPs)
scaffold0001 (28-86)||(408444-408501)
[»] scaffold0053 (1 HSPs)
scaffold0053 (48-86)||(2295-2333)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 16111075 - 16110783
Alignment:
Q  11 cacagaagcagttatatttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatca 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  16111075 cacataagcagttatatttatcatggttcaccaaaagccggctacttccagtcccgacacttcgtgtgagattaccatccattatagtatcctactatca 16110976  T
Q  111 aaaactttggaataacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  16110975 aaaactttggaataacactatatgttcttgatcacaccagaccaatctgttacattctgtattatcaacatcaacaggtttatacaattatttgctttcg 16110876  T
Q  211 ttcaagaaaggttggagagaattctctcttaaactattgtaaagaaatagacttgagaactagattacaatttgtaagataaagggatttgtt 303  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  16110875 ttcaagaaaggttggagcgaattctctctcaaactattgtaaacaaatagacttgagaactatattacaatttgtaagatgaagggatttgtt 16110783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 22118140 - 22118310
Alignment:
Q  52 ctacttccagtccccacacttcgtgtgagattatcatccattatagta-tcatactatcaaaaactttggaataacactatatgttcttgatcacaccag 150  Q
    ||||||||||||||||||| |||||||||||||||   |||||||||  || | ||| || ||||||  ||||||||||||| | |||||||||||||||    
T  22118140 ctacttccagtccccacacctcgtgtgagattatc---cattatagttgtcttgctaacagaaacttctgaataacactataaggtcttgatcacaccag 22118236  T
Q  151 accaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttg 224  Q
    | || ||||||||||  |||||||||||||||| || | || ||||||| ||||||||||  ||||||| ||||    
T  22118237 atcagtctgttacatcctgtattatcaacatcagcatgcttctacaattatttgctttcgcacaagaaacgttg 22118310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 11223547 - 11223355
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataaca 127  Q
    ||||| ||||||||||||  | ||||||||||||||||||||||||||||||||||   |||||||||||||| | | |   | ||||||   |  ||||    
T  11223547 ttatcctggttcaccaaactc-ggctacttccagtccccacacttcgtgtgagatt---atccattatagtat-acagtggtagaaacttctaaccaaca 11223453  T
Q  128 ctatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    ||||| | |||||||||||||||| || ||||| ||    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  11223452 ctataaggtcttgatcacaccagatcagtctgtaac-ccctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 11223355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 31150669 - 31150820
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | ||||||||||    
T  31150669 ccggctacgtccagtccccacactacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 31150765  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  31150766 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 31150820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 5600731 - 5600580
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||  ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | ||||||||||    
T  5600731 ccggctacgtccagtccccacaccacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 5600635  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  5600634 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 5600580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 5610377 - 5610226
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||  ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | ||||||||||    
T  5610377 ccggctacgtccagtccccacaccacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 5610281  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  5610280 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 5610226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 24413001 - 24412828
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  24413001 ttatcctggttcaccaaat-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 24412906  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || ||||| ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  24412905 actacaatttcttgatcacaccagatcagtctgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 24412828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 24244058 - 24244115
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  24244058 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcgtgtgagattatc 24244115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 24290682 - 24290739
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  24290682 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcgtgtgagattatc 24290739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 33955515 - 33955572
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  33955515 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 33955572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 42732592 - 42732649
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  42732592 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 42732649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 18569212 - 18569039
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  18569212 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 18569117  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || || || ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  18569116 actacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 18569039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 22489358 - 22489185
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  22489358 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttgtcttgctaacagaaacttatgactagc 22489263  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||||| | |||||||||||||||| || || ||||||   |||||||||||| ||| |||  || |||||||||||||    
T  22489262 actataagatcttgatcacaccagatcagtccgttaca-cctgtattatcaacctcagcagacttctacaattctttgc 22489185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 24422450 - 24422277
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  24422450 ttatcctggttcaccaaat-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 24422355  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || || || ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  24422354 actacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 24422277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 30454216 - 30454389
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  30454216 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 30454311  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || || || |||   |||||||||||| ||| |||| ||||||||||||||||    
T  30454312 actacaatttcttgatcacaccagatcagtccgtaaca-cctgtattatcaacctcagcaggcttatacaattctttgc 30454389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 13815388 - 13815445
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  13815388 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcatgtgagattatc 13815445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 20834603 - 20834546
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  20834603 ttatcctggttcaccaaac-ccggctacttccagtccccacactccgtgtgagattatc 20834546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 22448364 - 22448402
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22448364 ccggctacttccagtccccacacttcgtgtgagattatc 22448402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 30459274 - 30459331
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  30459274 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 30459331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 20036171 - 20036114
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| || ||||||||||||    
T  20036171 ttatcctggttcaccaaac-ccggctacttccagtccccacacatcatgtgagattatc 20036114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 30444863 - 30444901
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  30444863 ccggctacttccagtccccacacctcgtgtgagattatc 30444901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 33955650 - 33955708
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  33955650 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 33955708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 82
Target Start/End: Complemental strand, 26652768 - 26652738
Alignment:
Q  52 ctacttccagtccccacacttcgtgtgagat 82  Q
    |||||||||||||||||||||||||||||||    
T  26652768 ctacttccagtccccacacttcgtgtgagat 26652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 82
Target Start/End: Complemental strand, 26924353 - 26924323
Alignment:
Q  52 ctacttccagtccccacacttcgtgtgagat 82  Q
    |||||||||||||||||||||||||||||||    
T  26924353 ctacttccagtccccacacttcgtgtgagat 26924323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 37514889 - 37514931
Alignment:
Q  44 aaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||||||||||||| ||||||||||| | |||||||||||||    
T  37514889 aaagccggctacttctagtccccacaccttgtgtgagattatc 37514931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 44 - 304
Target Start/End: Original strand, 27083 - 27346
Alignment:
Q  44 aaagccggctacttccagtccccacacttcgtgtgagattatc-atccattatagtatcatactatcaaaaactttggaataacactatatgttcttgat 142  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||| |||||||||  ||||||| ||||||   ||||||||||||||||||||||    
T  27083 aaagtcggctacttccagtccccatacttcgtgtgagattatccatccactatagtatccaactatcagaaacttcttaataacactatatgttcttgat 27182  T
Q  143 cacaccagaccaatctgttacattttgtattatcaacatcaacaggtttat-acaattctttgctttcgttcaagaaaggttggagagaattctctctta 241  Q
    ||||| ||| ||||  |||||| | |||||||||||| ||| |||| |||| |||||||||||||||||  ||||||||||||||   | |||||||| |    
T  27183 cacactagatcaattcgttacactctgtattatcaacctcagcaggcttattacaattctttgctttcgcacaagaaaggttggaacaatttctctctca 27282  T
Q  242 aactattgtaaagaaatagacttgagaactagattacaa-tttgtaagataaagggatttgttg 304  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  27283 aactattgtacacaaatagacttgagaactagattacaattttgtaagatgaagggatttgttg 27346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 30676964 - 30676767
Alignment:
Q  26 atttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataa 125  Q
    ||||||||||||||||  ||||| | |||||| ||||||||||||||||||||||||||||   ||||| | |||    |||| | ||||||  |||||     
T  30676964 atttatcatggttcacacaaagcagactactttcagtccccacacttcgtgtgagattatc---cattacaatattcagctataagaaacttatgaatag 30676868  T
Q  126 cactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgg 225  Q
    |||||||||||||||||||||| ||| || ||||||||| | |||||||||||  ||||||   ||||| ||||||||||||||   |||||||||||||    
T  30676867 cactatatgttcttgatcacacaagatcagtctgttacactctgtattatcaatctcaacatacttatataattctttgctttcacacaagaaaggttgg 30676768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 5378439 - 5378632
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||   | || |    
T  5378439 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttgtcttgctaacagaaacttctaactagc 5378534  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttg 224  Q
    |||||| | |||||||||||||||| || |||||||||   | |||||| ||| ||| |||  || ||||||||||||||||||  ||||||||||||    
T  5378535 actataaggtcttgatcacaccagatcagtctgttacaccctatattataaacctcagcagacttctacaattctttgctttcgcacaagaaaggttg 5378632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 26906259 - 26906431
Alignment:
Q  26 atttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataa 125  Q
    ||||||| ||||||||||||  | ||||||||| |||||||| || |||||||||||||||   ||||||| |||| |  || || ||||||  || ||     
T  26906259 atttatcctggttcaccaaac-caggctacttctagtccccatacctcgtgtgagattatc---cattataatatcttgttaacagaaacttctgactag 26906354  T
Q  126 cactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    ||||||| ||||||| |||||||||| || ||||||||| | |||||||||||| ||| |||  || ||||||||||    
T  26906355 cactataagttcttggtcacaccagatcagtctgttacactctgtattatcaacctcagcagacttttacaattctt 26906431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 14272033 - 14272090
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  14272033 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 14272090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 14281899 - 14281956
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  14281899 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 14281956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 28310082 - 28310170
Alignment:
Q  87 atccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacaccagaccaatctgttacattttgtattat 175  Q
    ||||| ||||||||| | |||||||||||||  ||||||||||||| ||| |||||||||||||| || || |||||| | ||||||||    
T  28310082 atccactatagtatcctgctatcaaaaacttccgaataacactataagttgttgatcacaccagatcagtccgttacagtctgtattat 28310170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 21919465 - 21919503
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21919465 ccggctacttccagtccccacacttcgtgtgagattatc 21919503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 40999050 - 40999228
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagta-tcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||| | ||||||||||||||||| |||||||||||||||   || ||||||  || | ||| |  ||||||  || || |    
T  40999050 ttatcctggttcaccaaac-ccgacaacttccagtccccacacctcgtgtgagattatc---cactatagttgtcttgctaacggaaacttatgactagc 40999145  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttc 209  Q
    |||||| | | |||||||||||||| || | |||||||   |||||||||||| |||||||  || |||||||||||||||||    
T  40999146 actataaggttttgatcacaccagatcagtttgttacaccatgtattatcaacctcaacagacttctacaattctttgctttc 40999228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 3471087 - 3471142
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  |||||||||||    
T  3471087 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggtt 3471142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 3470952 - 3471009
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||| ||||||||| ||||||||||| ||||||||||||    
T  3470952 ttatcctggttcaccaaac-ccggttacttccagcccccacacttcatgtgagattatc 3471009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 32878021 - 32877870
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| ||||||||||||||   || ||||||||||| |||||| ||||||  |||||||||||||  || ||||||||||    
T  32878021 ccggctacgtccagtccccacactacgtgtgagattatc---cactatagtatcatgctatcataaacttctgaataacactataatttgttgatcacac 32877925  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || ||||||||| | |||||||||||| ||| |||| || ||| ||||||    
T  32877924 cagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattctt 32877870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 17529895 - 17530046
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | ||||||||||    
T  17529895 ccggctacgtccagtccccacactacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 17529991  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  17529992 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 17530046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 54624806 - 54624655
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | ||||||| ||    
T  54624806 ccggctacgtccagtccccacactacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcatac 54624710  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || ||||||||| | |||||||||||| ||| |||| || ||| ||||||    
T  54624709 cagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattctt 54624655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 5385862 - 5385805
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  5385862 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 5385805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 7784114 - 7784215
Alignment:
Q  123 taacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggt 222  Q
    |||||||||| | |||||||||||||||| || |||||||||   |||||||||||| ||| |||| || ||||||||||| | ||| | ||||||||||    
T  7784114 taacactataaggtcttgatcacaccagatcagtctgttacaccctgtattatcaacctcagcaggcttctacaattcttttccttcctacaagaaaggt 7784213  T
Q  223 tg 224  Q
    ||    
T  7784214 tg 7784215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 24794561 - 24794734
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  24794561 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 24794656  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || || || ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  24794657 actacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 24794734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 19388937 - 19388879
Alignment:
Q  27 tttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  19388937 tttatcctggttcaccaaaatc-ggctacttcaagtccccacacttcgtgtgagattatc 19388879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 24285553 - 24285443
Alignment:
Q  35 ggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatg 134  Q
    |||||||| |||||  |||||||||| |||| ||||||||||||||||||||   || ||||||||    |||||| |||||||  |||| |||| ||||    
T  24285553 ggttcacccaaagcaagctacttccactccctacacttcgtgtgagattatc---cactatagtattcagctatcagaaactttcaaatagcactgtatg 24285457  T
Q  135 ttcttgatcacacc 148  Q
    ||||||||||||||    
T  24285456 ttcttgatcacacc 24285443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 13328293 - 13328350
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  13328293 ttatcttggttcaccaaac-ccgactacttccagtccccacacttcgtgtgagattatc 13328350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 28367668 - 28367725
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  28367668 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 28367725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 28375486 - 28375543
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  28375486 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 28375543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 28383308 - 28383365
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  28383308 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 28383365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 46305680 - 46305781
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || ||||| ||   | ||||||||||| ||| |||| || ||||||||||||||||||  |||||||||||    
T  46305680 aacactataaggtcttgatcacaccagatcagtctgtaaccact-gtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggtt 46305778  T
Q  224 gga 226  Q
    |||    
T  46305779 gga 46305781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 28351741 - 28351792
Alignment:
Q  34 tggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  28351741 tggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 28351792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 38529192 - 38529365
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||||| ||||||||||  ||||||||||||||| ||||||| ||||||||||||   ||||| ||||| | || | ||| || ||| ||  || || |    
T  38529192 ttatcatagttcaccaaac-ccggctacttccagtgcccacacctcgtgtgagatt---atccactatagttgtcttgctaacagaaatttctgactagc 38529287  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||||| | ||||||||||||||||  | |||||||||  ||||||||||||| |||  ||| || |||||||||||||    
T  38529288 actataagatcttgatcacaccagatgagtctgttaca-cttgtattatcaacctcagtaggcttctacaattctttgc 38529365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 48978817 - 48978670
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| |||||||||||   ||||| ||||||||    | |||| ||||||  ||||| |||||||   | ||||||||||    
T  48978817 ccggctacgtccagtccccacactacgtgtgagatt---atccactatagtat----ccatcagaaacttctgaatagcactataatatgttgatcacac 48978725  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  48978724 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 48978670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 48988357 - 48988210
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| |||||||||||   ||||| ||||||||    | |||| ||||||  ||||| |||||||   | ||||||||||    
T  48988357 ccggctacgtccagtccccacactacgtgtgagatt---atccactatagtat----ccatcagaaacttctgaatagcactataatatgttgatcacac 48988265  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  48988264 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 48988210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 23487121 - 23487020
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || ||||| ||  || ||||||||||| ||| |||| || |||||||||||||||| |  |||||||| ||    
T  23487121 aacactataaggtcttgatcacaccagatcagtctgtaaccctt-gtattatcaacctcagcaggcttctacaattctttgcttttgcacaagaaagctt 23487023  T
Q  224 gga 226  Q
    |||    
T  23487022 gga 23487020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 4361634 - 4361720
Alignment:
Q  138 ttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttg 224  Q
    ||||||||| |||| || |||||||||  ||||||||||||| ||| |||  || | ||||||||| ||||||  ||||||||||||    
T  4361634 ttgatcacaacagatcattctgttacaccttgtattatcaacctcagcagacttcttcaattctttactttcgcacaagaaaggttg 4361720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 5385770 - 5385669
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || | ||| ||   | |||| |||||| ||| |||| || ||||||||||||||||||  |||||||||||    
T  5385770 aacactataaggtcttgatcacaccagatcagtatgtaaccact-gtatcatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggtt 5385672  T
Q  224 gga 226  Q
    |||    
T  5385671 gga 5385669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 13328385 - 13328486
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||  | |||||||||||||||| || || || ||  || ||||||||||| ||| || | || ||||||||||||||||||  |||||||||||    
T  13328385 aacactattaggtcttgatcacaccagatcagtccgtaaccctt-gtattatcaacctcagcaagcttctacaattctttgctttcgcacaagaaaggtt 13328483  T
Q  224 gga 226  Q
    |||    
T  13328484 gga 13328486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 46305608 - 46305645
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  46305608 ccggctacttccagtccccacacttcgt-tgagattatc 46305645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 14848 - 14999
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | ||||||||||    
T  14848 ccggctacgtccagtccccacactacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 14944  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || ||||||||| | |||||||||||| ||| |||| || ||| ||||||    
T  14945 cagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattctt 14999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 23623070 - 23622919
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | ||||||||||    
T  23623070 ccggctacgtccagtccccacactacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 23622974  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || ||||||||| | |||||||||||| ||| |||| || ||| ||||||    
T  23622973 cagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattctt 23622919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 45609598 - 45609487
Alignment:
Q  50 ggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacacca 149  Q
    ||||||||||||||| | |||||||| ||||||||||   || ||| |||||  ||||||| ||||||| ||||| |||||||||| |||||||||||||    
T  45609598 ggctacttccagtcctcgcacttcgtatgagattatc---cactatggtatccaactatcagaaacttttgaatagcactatatgtccttgatcacacca 45609502  T
Q  150 gaccaatctgttaca 164  Q
    || ||||||||||||    
T  45609501 gatcaatctgttaca 45609487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 41902668 - 41902782
Alignment:
Q  170 tattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttggagagaattctctcttaaactattgtaaagaaatagacttgagaa 269  Q
    |||||||||| |||||| | ||||||||||||||||||| |  || ||||||||||| | | |||| ||| |||||||||| || |||||||||||||||    
T  41902668 tattatcaacttcaacatgcttatacaattctttgcttttgcacaggaaaggttgga-acagttctttctcaaactattgt-aacaaatagacttgagaa 41902765  T
Q  270 ctagattacaatttgta 286  Q
    |||||||||| ||||||    
T  41902766 ctagattacactttgta 41902782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 37059259 - 37059086
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  37059259 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 37059164  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| | | |||||||||||||||| || || ||||||   |||||||||||| ||| |||| ||||||||||||||||    
T  37059163 actacaagatcttgatcacaccagatcagtccgttaca-cctgtattatcaacctcagcaggcttatacaattctttgc 37059086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 3242302 - 3242475
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  3242302 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 3242397  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || || || ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  3242398 actacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 3242475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 54689928 - 54690101
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  54689928 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 54690023  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || || || ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  54690024 actacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 54690101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 54699359 - 54699532
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  54699359 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 54699454  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || || || ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  54699455 actacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 54699532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 3918239 - 3918182
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  3918239 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 3918182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 20884483 - 20884521
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20884483 ccggctacttccagtccccacacttcgtgtgagattatc 20884521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 26812681 - 26812624
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  26812681 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 26812624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 26822148 - 26822091
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  26822148 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 26822091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 50516605 - 50516706
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || || || ||   ||||||||||||| ||| |||| |  |||||||||||||||||| ||||||||||||    
T  50516605 aacactataaggtcttgatcacaccagatcagtccgtaac-ccttgtattatcaacctcagcaggctgttacaattctttgctttcgctcaagaaaggtt 50516703  T
Q  224 gga 226  Q
    |||    
T  50516704 gga 50516706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 15842913 - 15843086
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  | ||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  15842913 ttatcttggttcaccaaactc-ggctacttccagtccccacacctcgtgtgagatt---atccactatagttgtcttgctaacagaaacttctgactagc 15843008  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||||| | ||||||||||| |||| || |||||||||   |||||||||||| | | |||| || |||||||||||||    
T  15843009 actataagatcttgatcacatcagatcagtctgttaca-cctgtattatcaacctaagcaggcttctacaattctttgc 15843086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 11482468 - 11482430
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  11482468 ccggctacttctagtccccacacttcgtgtgagattatc 11482430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 20884599 - 20884657
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  20884599 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 20884657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 50516536 - 50516570
Alignment:
Q  52 ctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||    
T  50516536 ctacttccagtccccacacttcgtgtgagattatc 50516570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 286
Target Start/End: Original strand, 28256166 - 28256324
Alignment:
Q  126 cactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgg 225  Q
    |||||||| |||||| |||||||  | ||  || ||||| | |||||| ||||| |||  ||| || |||||||||||| ||| |   ||||||||||||    
T  28256166 cactatattttcttggtcacaccgaatcagcctcttacactatgtattgtcaacctcattaggcttctacaattctttgtttttgcaaaagaaaggttgg 28256265  T
Q  226 agagaattctctcttaaactattgtaaagaaatagacttgagaactagattacaatttgta 286  Q
    | | ||||||  || |||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  28256266 a-acaattcttactcaaactattgtaacgaa-tagacttgagaactatattacactttgta 28256324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 11482352 - 11482294
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| | || || ||||||||||||||||||  ||||||||||||||    
T  11482352 tgtattatcaacctcagccggcttctacaattctttgctttcgcacaagaaaggttgga 11482294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 18125530 - 18125616
Alignment:
Q  138 ttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttg 224  Q
    ||||||||| |||| || |||||||||  ||||||||||||| ||| |||  || | ||||||||| ||||||  ||||||||||||    
T  18125530 ttgatcacaacagatcattctgttacaccttgtattatcaacctcagcagacttcttcaattctttactttcgcacaagaaaggttg 18125616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 21667752 - 21667844
Alignment:
Q  134 gttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||||| ||| || ||| |||||  ||||||| ||||| |||  | | || |||||||||||| |||||  ||||||||||||||    
T  21667752 gttcttgatcacactagatcagtctattacacattgtattgtcaacttcagtaagcttctacaattctttgttttcgcacaagaaaggttgga 21667844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 21676516 - 21676608
Alignment:
Q  134 gttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||||| ||| || ||| |||||  ||||||| ||||| |||  | | || |||||||||||| |||||  ||||||||||||||    
T  21676516 gttcttgatcacactagatcagtctattacacattgtattgtcaacttcagtaagcttctacaattctttgttttcgcacaagaaaggttgga 21676608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 11421485 - 11421611
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    ||||||||||||||||||||||| ||||||||||||   ||||| |||||||||||  || |||||| ||  || |||||||||| | ||||||||||||    
T  11421485 ccggctacttccagtccccacacctcgtgtgagatt---atccactatagtatcatgttaacaaaaaattctgactaacactataagatcttgatcacac 11421581  T
Q  148 cagaccaatctgttacattttgtattatca 177  Q
    |||| || |||||||||   ||||||||||    
T  11421582 cagatcagtctgttacaccatgtattatca 11421611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 22066465 - 22066408
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  22066465 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 22066408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 23895631 - 23895804
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  23895631 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 23895726  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |   |||||||||||||||| || || ||||||   |||||||||||| ||| |||| ||||||||||||||||    
T  23895727 actacaatatcttgatcacaccagatcagtccgttaca-cctgtattatcaacctcagcaggcttatacaattctttgc 23895804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 23884664 - 23884610
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagatt 83  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  23884664 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagatt 23884610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 24564716 - 24564759
Alignment:
Q  120 gaataacactatatgttcttgatcacaccagaccaatctgttac 163  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  24564716 gaataacactatatgttcttgatcacatcagatcaatctgttac 24564759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 14102480 - 14102423
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| || ||||||||||||    
T  14102480 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcttgtgagattatc 14102423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 22066330 - 22066272
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  22066330 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 22066272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 23884572 - 23884471
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || || || ||   | ||||||||||| ||| |||| || ||||||||||||||||||  |||||||||||    
T  23884572 aacactataaggtcttgatcacaccagatcagtccgtaaccact-gtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggtt 23884474  T
Q  224 gga 226  Q
    |||    
T  23884473 gga 23884471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 18420724 - 18420668
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattat 85  Q
    ||||| |||||||| |||| |||||||||||||||||| |||| ||||||||||||||    
T  18420724 ttatcctggttcac-aaaacccggctacttccagtcccgacacctcgtgtgagattat 18420668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 12173595 - 12173474
Alignment:
Q  26 atttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataa 125  Q
    ||||||||| ||||||||||  | |||||||| |||||||||||| | |||| |||||   ||||| ||||||||||| ||| || ||||||  || ||     
T  12173595 atttatcatagttcaccaaactc-ggctactttcagtccccacaccttgtgtaagatt---atccactatagtatcatgctaacagaaacttatgactag 12173500  T
Q  126 cactatatgttcttgatcacaccaga 151  Q
    ||| |||  |||||||||||||||||    
T  12173499 caccataaattcttgatcacaccaga 12173474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 17512238 - 17512295
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  | |||||||| ||||||||||||||| ||||||||||||    
T  17512238 ttatcctggttcaccaaactc-ggctactttcagtccccacacttcttgtgagattatc 17512295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 18420619 - 18420551
Alignment:
Q  136 tcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||||||||||||||| || || ||||||  | ||||||||||| ||| |||| ||||||||||||||||    
T  18420619 tcttgatcacaccagatcagtccgttacacct-gtattatcaacctcagcaggcttatacaattctttgc 18420551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 15834125 - 15833946
Alignment:
Q  26 atttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataa 125  Q
    ||||||| ||||||||||||  |||||||||| |||||| ||||| ||||||||||||   ||||||||||||||||| ||| |  ||||||  || ||     
T  15834125 atttatcttggttcaccaaat-ccggctactttcagtccacacacctcgtgtgagatt---atccattatagtatcatgctaactgaaacttctgactag 15834030  T
Q  126 cactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttc 209  Q
    ||||||| |||||||| || ||||||  | |  |||||    ||||||||||||||||  |||||| |||||||||||||||||    
T  15834029 cactataagttcttgaccataccagataagttcgttactccctgtattatcaacatcagtaggtttctacaattctttgctttc 15833946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 20714242 - 20714069
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagta-tcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||| ||||||   |||||||||  || | ||| || ||||||  || || |    
T  20714242 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgacattatc---cattatagttgtcttgctaacagaaacttctgactagc 20714147  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||||| | |||||||||||||||| || |||||||||   |||||||||||| ||| |||| || |||||||||||||    
T  20714146 actataagatcttgatcacaccagatcagtctgttaca-cctgtattatcaacctcagcaggcttctacaattctttgc 20714069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 7789099 - 7789266
Alignment:
Q  34 tggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataacactata 132  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || ||||| |    
T  7789099 tggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttgtcttgctaacagaaacttctgactagcactaca 7789194  T
Q  133 tgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
      ||||||||||||||||| || ||||| ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  7789195 atttcttgatcacaccagatcagtctgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 7789266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 12915631 - 12915574
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  12915631 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 12915574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 18143444 - 18143501
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18143444 ttatcttggttcaccaaat-ccggctacttccagtccccacacttcgtgtgagattatc 18143501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 18233099 - 18233042
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18233099 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcgtgtgagattatc 18233042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 18242550 - 18242493
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18242550 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcgtgtgagattatc 18242493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 18883175 - 18883232
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18883175 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcgtgtgagattatc 18883232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 20030351 - 20030294
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  20030351 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 20030294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 31575426 - 31575483
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  31575426 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcgtgtgagattatc 31575483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 42712193 - 42712250
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  42712193 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 42712250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 4843756 - 4843794
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4843756 ccggctacttccagtccccacacttcgtgtgagattatc 4843794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 18251982 - 18251944
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18251982 ccggctacttccagtccccacacttcgtgtgagattatc 18251944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 20044990 - 20044933
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  20044990 ttatcctggttcaccaaac-ccggctacatccagtccccacacttcgtgtgagattatc 20044933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 33592168 - 33592206
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33592168 ccggctacttccagtccccacacttcgtgtgagattatc 33592206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 33601807 - 33601845
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33601807 ccggctacttccagtccccacacttcgtgtgagattatc 33601845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 25037062 - 25037098
Alignment:
Q  50 ggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  25037062 ggctacttccagtccccacacttcgtgtgagattatc 25037098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 25051099 - 25051135
Alignment:
Q  50 ggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  25051099 ggctacttccagtccccacacttcgtgtgagattatc 25051135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 12767668 - 12767610
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  12767668 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 12767610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 12925503 - 12925469
Alignment:
Q  52 ctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||    
T  12925503 ctacttccagtccccacacttcgtgtgagattatc 12925469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 20030216 - 20030158
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  20030216 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 20030158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 20044855 - 20044797
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  20044855 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 20044797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 42712285 - 42712386
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || || || ||   | ||||||||||| ||| |||| || ||||||||||||||||||  |||||||||||    
T  42712285 aacactataaggtcttgatcacaccagatcagtccgtaaccact-gtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggtt 42712383  T
Q  224 gga 226  Q
    |||    
T  42712384 gga 42712386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 42896183 - 42896221
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  42896183 ccggctacttccagtctccacacttcgtgtgagattatc 42896221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 20714467 - 20714417
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtga 79  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||||||    
T  20714467 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtga 20714417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 12925391 - 12925333
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || |||||||||||| |||||  ||||||||||||||    
T  12925391 tgtattatcaacctcagcaggcttctacaattctttgttttcgcacaagaaaggttgga 12925333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 24634117 - 24634083
Alignment:
Q  52 ctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||| ||||||    
T  24634117 ctacttccagtccccacacttcgtgtgatattatc 24634083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 24096113 - 24096208
Alignment:
Q  52 ctacttccagtcccc-acacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacacca 149  Q
    ||||||||||||||| |||| ||||||||||||   ||||| ||||||||| | ||| || ||||||| || || ||||| | ||||||||| ||||||    
T  24096113 ctacttccagtcccccacacctcgtgtgagatt---atccactatagtatcttgctaacataaacttttgactagcactacaagttcttgattacacca 24096208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 100134 - 99999
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||  ||||||||||||||| ||||||||||||||   |||||||||||| | |||||| ||||||  ||||| |||||||   | ||||||||||    
T  100134 ccggctatgtccagtccccacactacgtgtgagattatc---cattatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 100038  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaaca 186  Q
    || | || ||||||||| | |||||||||||| ||||||    
T  100037 caaatcagtctgttacactctgtattatcaacctcaaca 99999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 143206 - 143148
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  143206 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 143148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 124195 - 124162
Alignment:
Q  53 tacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||||||||||||||||||||||||||||||||    
T  124195 tacttccagtccccacacttcgtgtgagattatc 124162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 1800644 - 1800493
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | ||||||||||    
T  1800644 ccggctacgtccagtccccacactacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacac 1800548  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  1800547 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 1800493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 22632553 - 22632402
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| ||||||||||||||   || ||||||||| | |||||| ||||||  || ||||||||||   | ||||||||||    
T  22632553 ccggctacgtccagtccccacactacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgactaacactataatatgttgatcacac 22632457  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  22632456 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 22632402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 35877688 - 35877631
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35877688 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 35877631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 35885177 - 35885120
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35885177 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 35885120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 36724890 - 36724833
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  36724890 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 36724833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 3397095 - 3397038
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||||||||||||||||  || |||||||| |||||||||||||||||||||||||||    
T  3397095 ttatcatggttcaccaaac-ccagctacttctagtccccacacttcgtgtgagattatc 3397038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 24022776 - 24022930
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagta-tcatactatcaaaaactttggaataacactatatgttcttgatcaca 146  Q
    ||||||||||||| | ||||||| |||||||||||||||   || ||||||  || | ||| || ||||||  || || ||||||| | |||||||||||    
T  24022776 ccggctacttccaattcccacacctcgtgtgagattatc---cactatagttgtcttgctaacagaaacttctgactagcactataagatcttgatcaca 24022872  T
Q  147 ccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    ||||| || || ||||||  | ||||||||||| |||||||| || |||||||||||||    
T  24022873 ccagatcagtccgttacacct-gtattatcaacctcaacaggcttctacaattctttgc 24022930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 31710500 - 31710654
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataacactatatgttcttgatcaca 146  Q
    ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || ||||||| | |||||||||||    
T  31710500 ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttgtcttgctaacagaaacttctgactagcactataagatcttgatcaca 31710596  T
Q  147 ccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    ||||| || || ||||||   |||||||||||| ||| |||  || |||||||||||||    
T  31710597 ccagatcagtccgttaca-cctgtattatcaacctcagcagacttctacaattctttgc 31710654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 1791146 - 1790999
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacac 147  Q
    |||||||| ||||||||||||||| |||||||||||   ||||| ||||||||    | |||| ||||||  ||||| |||||||   | ||||||||||    
T  1791146 ccggctacgtccagtccccacactacgtgtgagatt---atccactatagtat----ccatcagaaacttctgaatagcactataatatgttgatcacac 1791054  T
Q  148 cagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    |||| || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  1791053 cagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 1790999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 18578670 - 18578627
Alignment:
Q  261 acttgagaactagattacaatttgtaagataaagggatttgttg 304  Q
    |||||||||||| ||||||||||||||||| |||||||||||||    
T  18578670 acttgagaactaaattacaatttgtaagatgaagggatttgttg 18578627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 35877553 - 35877495
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  35877553 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 35877495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 35885042 - 35884984
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  35885042 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 35884984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 36724755 - 36724697
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  36724755 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 36724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 18578763 - 18578711
Alignment:
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaac 179  Q
    |||||| ||||||||| |||||||||||||||||||||   ||||||||||||    
T  18578763 actataagttcttgataacaccagaccaatctgttacaccctgtattatcaac 18578711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 3397003 - 3396902
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || || || ||   ||||||||||||| ||| |||  || || |||||||||||||||  |||||||||||    
T  3397003 aacactataaggtcttgatcacaccagatcagtccgtaac-cattgtattatcaacctcagcagacttctaaaattctttgctttcgcacaagaaaggtt 3396905  T
Q  224 gga 226  Q
    |||    
T  3396904 gga 3396902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 14273377 - 14273320
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||| ||||| |||||| |||||||||||||||    
T  14273377 ttatcctggttcaccaaac-ccggctactttcagtctccacacctcgtgtgagattatc 14273320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 15174715 - 15174540
Alignment:
Q  26 atttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaata 124  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| |||||||||  || ||    
T  15174715 atttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacaaaaacttctgacta 15174620  T
Q  125 acactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
     ||||| | | |||||||||||||||| || || ||||||   |||||||||||| ||| |||| ||||| ||||||||||    
T  15174619 gcactacaagatcttgatcacaccagatcagtccgttaca-cctgtattatcaacctcagcaggcttatataattctttgc 15174540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 14634793 - 14634986
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataaca 127  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||   ||||| ||||||||    ||   | ||||||   |  ||||    
T  14634793 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagatt---atccactatagtatgcagctggtagaaacttctaaccaaca 14634888  T
Q  128 ctatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    ||||| | |||||||||||||||| || || || ||    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  14634889 ctataaggtcttgatcacaccagatcagtccgtaac-cactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 14634986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 11634345 - 11634402
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  11634345 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcgtgtgagattatc 11634402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 14644493 - 14644550
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  14644493 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 14644550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 33292192 - 33292249
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  33292192 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 33292249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 9737099 - 9737061
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9737099 ccggctacttccagtccccacacttcgtgtgagattatc 9737061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 15947388 - 15947445
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  15947388 ttatcctggttcaccaaac-ccggctacttccagtcaccacacttcgtgtgagattatc 15947445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 32818168 - 32818111
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  32818168 ttatcctggttcaccaaac-ccggctacttccggtccccacacttcgtgtgagattatc 32818111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 7593179 - 7593006
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  | ||||||||||||||||||||| ||||||||||||   ||||||||||| | || | ||| || ||||||  || || |    
T  7593179 ttatcctggttcaccaaac-ctggctacttccagtccccacacctcgtgtgagatt---atccattatagttttcttgctaacagaaacttctgactagc 7593084  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |   |||||||||||||||| || || || |||   |||||||||||| ||| |||| ||||||||||||||||    
T  7593083 actacaatatcttgatcacaccagatcagtccgtaaca-cctgtattatcaacctcatcaggcttatacaattctttgc 7593006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 13874536 - 13874501
Alignment:
Q  51 gctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  13874536 gctacttccagtccccacacttcgtgtgagattatc 13874501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 9736983 - 9736925
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  9736983 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 9736925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 14644585 - 14644686
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || || || ||   | ||||||||||| ||| |||| || ||||||||||||||||||  |||||||||||    
T  14644585 aacactataaggtcttgatcacaccagatcagtccgtaaccact-gtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggtt 14644683  T
Q  224 gga 226  Q
    |||    
T  14644684 gga 14644686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 15947480 - 15947581
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || || || ||   | ||||||||||| ||| |||| || ||||||||||||||||||  |||||||||||    
T  15947480 aacactataaggtcttgatcacaccagatcagtccgtaaccact-gtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggtt 15947578  T
Q  224 gga 226  Q
    |||    
T  15947579 gga 15947581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 33292284 - 33292385
Alignment:
Q  124 aacactatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggtt 223  Q
    ||||||||| | |||||||||||||||| || || || ||   | ||||||||||| ||| |||| || ||||||||||||||||||  |||||||||||    
T  33292284 aacactataaggtcttgatcacaccagatcagtccgtaaccact-gtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggtt 33292382  T
Q  224 gga 226  Q
    |||    
T  33292383 gga 33292385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 4306571 - 4306719
Alignment:
Q  26 atttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataa 125  Q
    ||||||| | |||||||||| ||| |||||||||||| ||||||||||| ||||||||    || | |||||||||  ||||||| ||||||  |||||     
T  4306571 atttatcctagttcaccaaa-gccagctacttccagttcccacacttcgagtgagatt---ttctactatagtatccaactatcagaaacttatgaatag 4306666  T
Q  126 cactatatgttcttgatcacaccagaccaatctg-ttacattttgtattatcaac 179  Q
    |||  |||||| |||||||||||||| || || | ||||| | ||||||||||||    
T  4306667 cac--tatgttgttgatcacaccagatcagtccgattacactctgtattatcaac 4306719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 19352624 - 19352661
Alignment:
Q  49 cggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||| |||||||||||||||||||||    
T  19352624 cggctacttccagtcctcacacttcgtgtgagattatc 19352661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 24741 - 24593
Alignment:
Q  51 gctacttccagtccccacacttcgtgtgagattatcatccattatagtatcatactatcaaaaactttggaataacactatatgttcttgatcacaccag 150  Q
    ||||| ||||||||||||||| ||||||||||||||   || ||||||||| | |||||| ||||||  ||||| |||||||   | |||||||||||||    
T  24741 gctacgtccagtccccacactacgtgtgagattatc---cactatagtatcctgctatcagaaacttctgaatagcactataatatgttgatcacaccag 24645  T
Q  151 accaatctgttacattttgtattatcaacatcaacaggtttatacaattctt 202  Q
    | || || |||||| | |||||||||||| ||| |||| || ||| ||||||    
T  24644 atcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 24593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 3700 - 3533
Alignment:
Q  34 tggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataacactata 132  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || ||||| |    
T  3700 tggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttgtcttgctaacagaaacttctgactagcactaca 3605  T
Q  133 tgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
      ||||||||||||||||| || ||||| ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  3604 atttcttgatcacaccagatcagtctgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 3533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 2281 - 2224
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  2281 ttatcctggttcaccaaac-ccggctacttccagtccccacacttcgtgtgagattatc 2224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 2146 - 2088
Alignment:
Q  168 tgtattatcaacatcaacaggtttatacaattctttgctttcgttcaagaaaggttgga 226  Q
    |||||||||||| ||| |||| || ||||||||||||||||||  ||||||||||||||    
T  2146 tgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttgga 2088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 30838 - 30895
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  30838 ttatcctggttcaccaaac-ccggctacttccagtccccacacctcgtgtgagattatc 30895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 257130 - 257073
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  257130 ttatcctggttcaccaaat-ccggctacttccagtccccacacttcgtgtgaaattatc 257073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 94465 - 94619
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataacactatatgttcttgatcaca 146  Q
    ||||||||||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || ||||| |  ||||||||||||    
T  94465 ccggctacttccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagcactacaatttcttgatcaca 94561  T
Q  147 ccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    ||||| || || || ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  94562 ccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 94619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 103887 - 104060
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatcatccattatag-tatcatactatcaaaaactttggaataac 126  Q
    ||||| ||||||||||||  ||||||| ||||||||||||||| ||||||||||||   ||||| ||||| | || | ||| || ||||||  || || |    
T  103887 ttatcctggttcaccaaac-ccggctaattccagtccccacacctcgtgtgagatt---atccactatagttttcttgctaacagaaacttctgactagc 103982  T
Q  127 actatatgttcttgatcacaccagaccaatctgttacattttgtattatcaacatcaacaggtttatacaattctttgc 205  Q
    |||| |  ||||||||||||||||| || || || ||  | |||||||||||| ||| |||| ||||||||||||||||    
T  103983 actacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatcaacctcagcaggcttatacaattctttgc 104060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 12582 - 12620
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  12582 ccggctacttccagtccctacacttcgtgtgagattatc 12620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 408501 - 408444
Alignment:
Q  28 ttatcatggttcaccaaaagccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||| ||||||||||||  ||| ||||||||||||||||||| |||||||||||||||    
T  408501 ttatcctggttcaccaaac-ccgtctacttccagtccccacacctcgtgtgagattatc 408444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 2295 - 2333
Alignment:
Q  48 ccggctacttccagtccccacacttcgtgtgagattatc 86  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  2295 ccggctacttctagtccccacacttcttgtgagattatc 2333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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