View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_high_22 (Length: 297)

Name: NF15791_high_22
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_high_22
NF15791_high_22
[»] chr7 (1 HSPs)
chr7 (15-297)||(43672453-43672735)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 43672735 - 43672453
Alignment:
Q  15 gagcagagagtggcatagatggaattttagggaaccttttcaaaacttcattatcatccaaactcaacttctcactaccttcaacactaccccaaccagg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43672735 gagcagagagtggcatagatggaattttagggaaccttttcaaaacttcattatcatccaaactcaacttctcactaccttcaacactaccccaaccagg 43672636  T
Q  115 actaagtgggtcccctacacctttcatcacgtgacctctctcaaacccatcacgccacgtgtcattctcatcattataaaccagaaccgctacagcaccg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43672635 actaagtgggtcccctacacctttcatcacgtgacctctctcaaacccattacgccacgtgtcattctcatcattataaactagaaccgctacagcaccg 43672536  T
Q  215 ttttcctcagccttttcaaccaccgtgttcctccctaaaccaccaccttttcttactatcactatacatcccttaatgcttac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43672535 ttttcctcagccttttcaaccaccgtgttcctccctaaaccaccaccttttcttactatcactatacatcccttaatgcttac 43672453  T

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