View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_high_3 (Length: 551)
Name: NF15791_high_3
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Original strand, 24086567 - 24087093
Alignment:
| Q |
18 |
cctggtaaccactttaccttctacaagaaagaaccttgaaaatataaaataagaaactatcacaacttactttattgggccagtaactttatgtttgtga |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24086567 |
cctgttaaccactttaccttctacaagaaagaaccttgaaaatataaaataagaaactatcacaacttactttattgggccagtaactttatgtttgtga |
24086666 |
T |
|
| Q |
118 |
ataggcaaggcatttatctcctcctcagacattgaacgagtaccaaaagcaataactctcaaagtgtcataatctgccacaaaatgaagcaaaaagataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24086667 |
ataggcaaggcatttatctcctcctcagacattgaacgagtaccaaaagcaagaactctcaaagtgtcataatctgccacaaaatgaagcaaaaagctaa |
24086766 |
T |
|
| Q |
218 |
tgaaaatgtatacatgaacaaag-ggcattttcttttggcattgtcaacttaaatgaatatgaaaagttacacatccaaatgtacaattcagaagcataa |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24086767 |
tgaaaatgtatacatgaacaaaaaggcattttcttttggcattgtcaacttaaatgaatatgaaaagttacacatccaaaagtacaattcagaagcataa |
24086866 |
T |
|
| Q |
317 |
tacctatctcattaaaatctcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgtgaac |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24086867 |
tacctatctcattaaaatctcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgcgaac |
24086966 |
T |
|
| Q |
417 |
tcgtaattcagcatggccaagtaacccagaggctgctgcagcatgagccctggcctgtgcttgaagatgcagataaattgcatacgccctcagacttgta |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24086967 |
tcgtaattcagcatggccaagtaacccagaggctgctgcagcatgagccctggcctgtgattgaagatgcagataaattgcatacgccctcagacttgta |
24087066 |
T |
|
| Q |
517 |
atcatcacagagaccgacagtattatc |
543 |
Q |
| |
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| T |
24087067 |
accatcacaaagaccgacagtattatc |
24087093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Original strand, 24090634 - 24091155
Alignment:
| Q |
18 |
cctggtaaccactttaccttctacaagaaagaaccttgaaaatataaaataagaaactatcacaacttactttattgggccagtaactttatgtttgtga |
117 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
24090634 |
cctgttaaccactttactttctacaagaa----ccttgaaaataaaaaataagaaacta-cacagcttactttattgggccagtaactttatgtttgtga |
24090728 |
T |
|
| Q |
118 |
ataggcaaggcatttatctcctcctcagacattgaacgagtaccaaaagcaataactctcaaagtgtcataatctgccacaaaatgaagcaaaaagataa |
217 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24090729 |
ataggcaaggcatttatctcctcctcactcattgaaggagtaccaaaagcaagaactctcaaagtgtcataatctgccacaaaatgaagcaaaaagctaa |
24090828 |
T |
|
| Q |
218 |
tgaaaatgtatacatgaacaaag-ggcattttcttttggcattgtcaacttaaatgaatatgaaaagttacacatccaaatgtacaattcagaagcataa |
316 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
24090829 |
tgaaaatgtatacatgaacaaaaaggcattttcttttggcattgtcaacttaaatgaatatgaaaagttacacatccaaaagtgcaattcagaagtataa |
24090928 |
T |
|
| Q |
317 |
tacctatctcattaaaatctcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgtgaac |
416 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24090929 |
tacctatctcattaaaatttcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgtgaac |
24091028 |
T |
|
| Q |
417 |
tcgtaattcagcatggccaagtaacccagaggctgctgcagcatgagccctggcctgtgcttgaagatgcagataaattgcatacgccctcagacttgta |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24091029 |
tcgtaattcagcatggccaagtaacccagaggctgctgcagcatgagccctggcctgtgattgaagatgcagataaattgcatacgccctcagacttgta |
24091128 |
T |
|
| Q |
517 |
atcatcacagagaccgacagtattatc |
543 |
Q |
| |
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| ||||||| ||||||||||||||||| |
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|
| T |
24091129 |
accatcacaaagaccgacagtattatc |
24091155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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