View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_high_40 (Length: 219)
Name: NF15791_high_40
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_high_40 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 23190 - 22974
Alignment:
| Q |
1 |
gataaacatcgagtacaatgaaatttgtccaaacctaatcacatcaagcaggagaaaatcaggtatacactcttgtactattcaattttgttttccacgt |
100 |
Q |
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| T |
23190 |
gataaacatctagcacaatgaaatttgtcaaaaccgaatcacatcaagcaggagaa--tcaggtatacactcttgtactattcaattttgttttccacgt |
23093 |
T |
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| Q |
101 |
caatcatgattcaactatattgtgacataaacatatttatttattcttaagaaattgtaatgtttcctttgtctaaatggtagatgaaagaattagacat |
200 |
Q |
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| T |
23092 |
caatcatgattcaactatattgtgacataaacatatttatttattcttaagaaattataatgttttctttgtctaaatggtagatgaaagaattagacat |
22993 |
T |
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| Q |
201 |
atctagaaataggtgatct |
219 |
Q |
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| T |
22992 |
gtctagaaataggtgatct |
22974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 13321 - 13116
Alignment:
| Q |
11 |
gagtacaatgaaattt-gtccaaacctaatcacatcaagcaggagaaaatcaggtatacactctt-gtactattcaattttgttttccacgtcaatcatg |
108 |
Q |
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| T |
13321 |
gagtacaattaaattttgttcaaacctaatcacatcaagcaggagaa--tcaggtatacaatcatagtacacttcatttttgttttccggttcaaacata |
13224 |
T |
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| Q |
109 |
attcaactatattgtgacataaacatatttatttattcttaagaaattgtaatgtttcctttgtctaaatggtagatgaaagaattagacatatctagaa |
208 |
Q |
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| T |
13223 |
attcaattatttcgtgacctaaacaaatttatttattctta-gaaattacaatgttttttttgtttaaatggtagatgaaagaatgagacatgtctagaa |
13125 |
T |
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| Q |
209 |
ataggtgat |
217 |
Q |
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| T |
13124 |
ataagtgat |
13116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 2366 - 2213
Alignment:
| Q |
22 |
aatttgtccaaacctaatcacatcaagcaggagaaaatcaggtatacactctt-gtactattcaattttgttttccacgtcaatcatgattcaactatat |
120 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||| | | || |||| |||| |||||||||||| |||| ||| |||||| ||| | |
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| T |
2366 |
aatttgttcaaacctaatcacatcaagcaggagaa--tcaggtatataattttagtacacttcatttttgttttccagttcaaacataattcaattattt |
2269 |
T |
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| Q |
121 |
tgtgacataaacatatttatttattcttaagaaattgtaatgtttcctttgtctaaa |
177 |
Q |
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| T |
2268 |
cgtgacataaacaaatttatttattctt-agaaattgcaatgttttctttgtttaaa |
2213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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