View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_10 (Length: 409)
Name: NF15791_low_10
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 402
Target Start/End: Complemental strand, 2906392 - 2905996
Alignment:
| Q |
6 |
gatggacatcatccaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaa |
105 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906392 |
gatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaa |
2906293 |
T |
|
| Q |
106 |
aatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcga |
205 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906292 |
aatccccttctcattcccctgttggtggcggcggtggagagcgtcgtgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcga |
2906193 |
T |
|
| Q |
206 |
ggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtctaga |
305 |
Q |
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| T |
2906192 |
ggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtctaga |
2906093 |
T |
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| Q |
306 |
taaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906092 |
taaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 402
Target Start/End: Complemental strand, 2854364 - 2853968
Alignment:
| Q |
6 |
gatggacatcatccaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaa |
105 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854364 |
gatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaa |
2854265 |
T |
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| Q |
106 |
aatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcga |
205 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2854264 |
aatccccttctcattcccctgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgggagatgaatttggtggcggcagcga |
2854165 |
T |
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| Q |
206 |
ggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtctaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2854164 |
ggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtctaga |
2854065 |
T |
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| Q |
306 |
taaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854064 |
taaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2853968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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