View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_16 (Length: 336)
Name: NF15791_low_16
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 36310021 - 36310295
Alignment:
| Q |
12 |
aacctgtggctgggagttttccttcggtgcattttcatgttcctggccaaaatgcaaaaggagaggaaggaatatttgttttgatttccttacctactaa |
111 |
Q |
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| T |
36310021 |
aacctggggctgggagttttccttcggtgcattttcatgttcctggccaaaatgcaaaaggagaggaaggaatatttgttttgatttccttacctactaa |
36310120 |
T |
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| Q |
112 |
agttatgacagcttttgccaaagagttggatgacttaattgcagcaacaaattaagccaccttatctatttttagattgtctatttgaaaccgcaaataa |
211 |
Q |
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| T |
36310121 |
agttatgacagcttttgccaaagagttggatgacttaattgcagcaacaaattaagccactttatctatttttagaatgtctatttgaaaacgcaaataa |
36310220 |
T |
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| Q |
212 |
taaagtctgagagtggttacgttgtttgcattcaagctcnnnnnnnacgcaatggttggcttgttgtggatttggt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
36310221 |
taaagtctgagagtggttacgttgtttgcattcaagctctttgtttatgcaatggttggctt-ttgtggatttggt |
36310295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 320
Target Start/End: Original strand, 36310376 - 36310407
Alignment:
| Q |
289 |
taatctagaccatccattttgatattaatggt |
320 |
Q |
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| T |
36310376 |
taatctagaccatccattttgatattaatggt |
36310407 |
T |
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