View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_low_17 (Length: 330)

Name: NF15791_low_17
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_low_17
NF15791_low_17
[»] chr5 (11 HSPs)
chr5 (101-316)||(1849621-1849836)
chr5 (101-316)||(1163930-1164145)
chr5 (114-316)||(3299150-3299352)
chr5 (114-316)||(3392043-3392245)
chr5 (118-312)||(38987356-38987550)
chr5 (118-312)||(40417946-40418140)
chr5 (118-266)||(39726115-39726263)
chr5 (118-266)||(39879517-39879665)
chr5 (120-266)||(39168603-39168749)
chr5 (119-233)||(39399637-39399751)
chr5 (1-44)||(1163809-1163852)
[»] chr4 (1 HSPs)
chr4 (120-312)||(25912530-25912722)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 101 - 316
Target Start/End: Complemental strand, 1849836 - 1849621
Alignment:
Q  101 atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  1849836 atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaa 1849737  T
Q  201 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849736 cagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1849637  T
Q  301 tactaggcagaataat 316  Q
    ||||||||||||||||    
T  1849636 tactaggcagaataat 1849621  T

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Target: chr5; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 101 - 316
Target Start/End: Original strand, 1163930 - 1164145
Alignment:
Q  101 atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaa 200  Q
    |||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||  || ||||||||||||||    
T  1163930 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 1164029  T
Q  201 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164030 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1164129  T
Q  301 tactaggcagaataat 316  Q
    ||||||||||||||||    
T  1164130 tactaggcagaataat 1164145  T

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Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 114 - 316
Target Start/End: Complemental strand, 3299352 - 3299150
Alignment:
Q  114 ataccgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaagg 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||  || |||||||||||||||||||||||||||    
T  3299352 ataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 3299253  T
Q  214 taaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 313  Q
    ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  3299252 taaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaat 3299153  T
Q  314 aat 316  Q
    |||    
T  3299152 aat 3299150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 114 - 316
Target Start/End: Complemental strand, 3392245 - 3392043
Alignment:
Q  114 ataccgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaagg 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||  || |||||||||||||||||||||||||||    
T  3392245 ataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 3392146  T
Q  214 taaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 313  Q
    ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  3392145 taaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaat 3392046  T
Q  314 aat 316  Q
    |||    
T  3392045 aat 3392043  T

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Target: chr5; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 118 - 312
Target Start/End: Complemental strand, 38987550 - 38987356
Alignment:
Q  118 cgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaa 217  Q
    |||||||||||||||| |||||||||  ||||  ||||||| |   ||| ||||| | ||||||  ||| ||| | ||||||||||||||||||||||||    
T  38987550 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 38987451  T
Q  218 tggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 312  Q
    |||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||||  ||||||||    
T  38987450 tggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcagaa 38987356  T

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Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 312
Target Start/End: Complemental strand, 40418140 - 40417946
Alignment:
Q  118 cgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaa 217  Q
    |||||||||||||||| |||||||||  ||||  ||||||| |   ||| ||||| | ||||||  ||| ||| | ||||||||||||||||||||||||    
T  40418140 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 40418041  T
Q  218 tggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 312  Q
    |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||  ||| ||||||||| ||| ||||  ||||||||    
T  40418040 tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaa 40417946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 266
Target Start/End: Complemental strand, 39726263 - 39726115
Alignment:
Q  118 cgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaa 217  Q
    |||||||||||||||| |||||||||  ||||  ||||||| |   ||| ||||| | ||||||  ||| ||| | ||||||||||||||||||||||||    
T  39726263 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 39726164  T
Q  218 tggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaata 266  Q
    |||||||||||||||||||||| ||||||||||||| || || ||||||    
T  39726163 tggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39726115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 266
Target Start/End: Complemental strand, 39879665 - 39879517
Alignment:
Q  118 cgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaa 217  Q
    |||||||||||||||| |||||||||  ||||  ||||||| |   ||| ||||| | ||||||  ||| ||| | ||||||||||||||||||||||||    
T  39879665 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 39879566  T
Q  218 tggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaata 266  Q
    |||||||||||||||||||||| ||||||||||||| || || ||||||    
T  39879565 tggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39879517  T

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Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 39168749 - 39168603
Alignment:
Q  120 agaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaatg 219  Q
    ||||||||||||| ||||||||||  ||||| ||||||| ||  ||||||||||| ||||||   ||||||||||||| || |    |||||||||||||    
T  39168749 agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg 39168650  T
Q  220 gatcaagcaaagtaaatgttctggcaaccctagtacaaataacaata 266  Q
    ||||||| ||||||| | || ||||||||||||| || |||||||||    
T  39168649 gatcaagtaaagtaatttttttggcaaccctagtgcatataacaata 39168603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 39399751 - 39399637
Alignment:
Q  119 gagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaat 218  Q
    |||||||| |||||  |||||||||  ||||  ||||||| ||  ||| ||||||| ||||||  |||||||||||||| || |   |||||||||||||    
T  39399751 gagaacaaaatatttgactaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaat 39399652  T
Q  219 ggatcaagcaaagta 233  Q
    |||||||||||||||    
T  39399651 ggatcaagcaaagta 39399637  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1163809 - 1163852
Alignment:
Q  1 aacgatattttttggcagcagcaggataagtagcataagcatca 44  Q
    |||||||||||||||||||||||| |||||||||| ||||||||    
T  1163809 aacgatattttttggcagcagcagtataagtagcaaaagcatca 1163852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 120 - 312
Target Start/End: Original strand, 25912530 - 25912722
Alignment:
Q  120 agaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaatg 219  Q
    ||||||| |||||| ||||||||| |||||| |||| |||||  ||||||||||| ||||||  |||||||||| |||||||| || |||||||||||||    
T  25912530 agaacaatatattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatg 25912629  T
Q  220 gatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 312  Q
    ||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||  ||  ||||||||||||| ||||  ||||||||    
T  25912630 gatcaagtaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaa 25912722  T

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