View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_low_18 (Length: 329)

Name: NF15791_low_18
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_low_18
NF15791_low_18
[»] chr4 (3 HSPs)
chr4 (20-307)||(17446067-17446355)
chr4 (147-289)||(9630808-9630947)
chr4 (20-66)||(21539884-21539930)
[»] chr8 (3 HSPs)
chr8 (21-66)||(4786355-4786400)
chr8 (21-66)||(7658460-7658505)
chr8 (21-74)||(9382969-9383022)
[»] chr7 (3 HSPs)
chr7 (21-66)||(27945038-27945083)
chr7 (31-66)||(27732256-27732291)
chr7 (21-73)||(29787379-29787431)
[»] chr3 (6 HSPs)
chr3 (32-69)||(14618789-14618826)
chr3 (15-66)||(1830334-1830385)
chr3 (21-66)||(12704004-12704049)
chr3 (25-66)||(14840308-14840349)
chr3 (32-76)||(11251986-11252030)
chr3 (22-66)||(16192767-16192811)
[»] chr6 (4 HSPs)
chr6 (24-59)||(14721241-14721276)
chr6 (25-76)||(31579232-31579283)
chr6 (22-60)||(322517-322555)
chr6 (21-66)||(9658876-9658921)
[»] chr2 (4 HSPs)
chr2 (25-76)||(2331795-2331846)
chr2 (21-66)||(19573975-19574020)
chr2 (23-76)||(30298454-30298507)
chr2 (22-66)||(17776585-17776629)
[»] chr1 (4 HSPs)
chr1 (22-76)||(2288174-2288228)
chr1 (32-66)||(21038091-21038125)
chr1 (21-66)||(5376517-5376562)
chr1 (22-66)||(34298434-34298478)
[»] scaffold0004 (1 HSPs)
scaffold0004 (21-66)||(92804-92849)
[»] chr5 (1 HSPs)
chr5 (21-66)||(27932232-27932277)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 17446067 - 17446355
Alignment:
Q  20 tgccgacaccattaataatttaagaaaactacataattcagtgtaataatg-tgtcggacaaacctaatctgagtagtgttattgtttcatagtttgtaa 118  Q
    ||||||||||| ||||||||||||||||  |||||||| |||||||| ||| |||||||||   |||||||||||||||||| |||||||||||||||||    
T  17446067 tgccgacaccactaataatttaagaaaatcacataatttagtgtaatcatggtgtcggacacgtctaatctgagtagtgttagtgtttcatagtttgtaa 17446166  T
Q  119 ctnnnnnnncatgagtatattatgtatcactcaccatccgatccagaaccatttggggctccataccatgtagctattgccgtttgccattgatcattat 218  Q
    ||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17446167 ctaaaaaaacatgagtatattatgtatcactcaccatccgatccagcaccatttggggctccataccatgtagctattgccgtttgccattgatcattat 17446266  T
Q  219 cattttgaatttcagaaacatttttaaacaatttacggttgaggcaataacaagggtttaacataagagaagaaaatattacaagagaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17446267 cattttgaatttcagaaacatttttaaacaatttacggttgaggcaataacaagggtttaacataagagaagaaaatattacaagagaa 17446355  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 147 - 289
Target Start/End: Original strand, 9630808 - 9630947
Alignment:
Q  147 actcaccatccgatccagaaccatttggggctccataccatgtagctattgccgtttgccattgatcattatcattttgaatttcagaaacatttttaaa 246  Q
    |||||||||| ||||||| ||| | ||| |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||   || ||    
T  9630808 actcaccatctgatccagcaccttctggtgctccataccatgtagctattgccatttgccatggatcattaacattttgaatttcagaaaca---ttgaa 9630904  T
Q  247 caatttacggttgaggcaataacaagggtttaacataagagaa 289  Q
    ||||||| |||||||||||||||||||||| | || |||||||    
T  9630905 caatttagggttgaggcaataacaagggttaatcagaagagaa 9630947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 21539930 - 21539884
Alignment:
Q  20 tgccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    ||||||||||||||||||||||||||||  | |||||| ||||||||    
T  21539930 tgccgacaccattaataatttaagaaaatcatataatttagtgtaat 21539884  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 4786400 - 4786355
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  4786400 gccgacaccattaataatttaagaaaatcacataattcagtgtaat 4786355  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 7658460 - 7658505
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||    
T  7658460 gccgacaccactaataatttgagaaaattacataattcagtgtaat 7658505  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 9382969 - 9383022
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaataatgtgtc 74  Q
    ||||| ||||| |||||||| |||||||||||||||||| |||||| |||||||    
T  9382969 gccgataccatgaataatttgagaaaactacataattcaatgtaattatgtgtc 9383022  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 27945038 - 27945083
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||    
T  27945038 gccgacaccactaataatttgagaaaattacataattcagtgtaat 27945083  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 27732291 - 27732256
Alignment:
Q  31 ttaataatttaagaaaactacataattcagtgtaat 66  Q
    ||||||||||||||||| ||||||||||||||||||    
T  27732291 ttaataatttaagaaaattacataattcagtgtaat 27732256  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 29787431 - 29787379
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaataatgtgt 73  Q
    |||||||||  ||||||||| ||||||  ||||||||||||||||| ||||||    
T  29787431 gccgacaccgctaataatttgagaaaatcacataattcagtgtaattatgtgt 29787379  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 14618789 - 14618826
Alignment:
Q  32 taataatttaagaaaactacataattcagtgtaataat 69  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14618789 taataatttaagaaaaccacataattcagtgtaataat 14618826  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 1830334 - 1830385
Alignment:
Q  15 ggacttgccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||| |||||||||  |||||||||||||||||  |||||||||||||||||    
T  1830334 ggacatgccgacacttttaataatttaagaaaatgacataattcagtgtaat 1830385  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 12704004 - 12704049
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||| ||||||||| ||||||  |||||||||||||||||    
T  12704004 gccgacaccactaataatttgagaaaagcacataattcagtgtaat 12704049  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 14840349 - 14840308
Alignment:
Q  25 acaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||||||||| ||||||  |||||||||||||||||    
T  14840349 acaccattaataatttcagaaaatcacataattcagtgtaat 14840308  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 11251986 - 11252030
Alignment:
Q  32 taataatttaagaaaactacataattcagtgtaataatgtgtcgg 76  Q
    ||||||||| ||||||  ||||||||||||||||| |||||||||    
T  11251986 taataatttgagaaaatcacataattcagtgtaattatgtgtcgg 11252030  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 16192811 - 16192767
Alignment:
Q  22 ccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||| |||||||||| ||||||  |||||||||||||||||    
T  16192811 ccgacaccgttaataatttgagaaaataacataattcagtgtaat 16192767  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 14721241 - 14721276
Alignment:
Q  24 gacaccattaataatttaagaaaactacataattca 59  Q
    |||||||||||||||||||||||| |||||||||||    
T  14721241 gacaccattaataatttaagaaaattacataattca 14721276  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 31579283 - 31579232
Alignment:
Q  25 acaccattaataatttaagaaaactacataattcagtgtaataatgtgtcgg 76  Q
    ||||| |||||||||| ||||||  ||||||||||||||||| |||||||||    
T  31579283 acaccgttaataatttgagaaaatcacataattcagtgtaattatgtgtcgg 31579232  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 322517 - 322555
Alignment:
Q  22 ccgacaccattaataatttaagaaaactacataattcag 60  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  322517 ccgacaccactaataatttaagaaaattacataattcag 322555  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 9658876 - 9658921
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||  ||||||||||||||||  |||||||||||||||||    
T  9658876 gccgacaccgctaataatttaagaaaatcacataattcagtgtaat 9658921  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 2331795 - 2331846
Alignment:
Q  25 acaccattaataatttaagaaaactacataattcagtgtaataatgtgtcgg 76  Q
    |||||||||||||||| ||||||  ||||||||||||||| | |||||||||    
T  2331795 acaccattaataatttgagaaaatcacataattcagtgtatttatgtgtcgg 2331846  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 19573975 - 19574020
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||  ||||||||||||||||  |||||||||||||||||    
T  19573975 gccgacaccgataataatttaagaaaataacataattcagtgtaat 19574020  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 30298507 - 30298454
Alignment:
Q  23 cgacaccattaataatttaagaaaactacataattcagtgtaataatgtgtcgg 76  Q
    |||||||  ||||||||||| ||||  ||||||||||||||||| |||||||||    
T  30298507 cgacaccgataataatttaataaaatgacataattcagtgtaatcatgtgtcgg 30298454  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 17776585 - 17776629
Alignment:
Q  22 ccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||| |||| ||||||||||||||||| |||||| ||||||||||    
T  17776585 ccgataccaataataatttaagaaaaccacataagtcagtgtaat 17776629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 2288228 - 2288174
Alignment:
Q  22 ccgacaccattaataatttaagaaaactacataattcagtgtaataatgtgtcgg 76  Q
    |||||| || ||||||||||||||||  |||||||||| |||||| |||||||||    
T  2288228 ccgacaacaataataatttaagaaaatcacataattcaatgtaattatgtgtcgg 2288174  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 21038091 - 21038125
Alignment:
Q  32 taataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||||||||| ||||||||||||||||||    
T  21038091 taataatttaagaaaattacataattcagtgtaat 21038125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 5376562 - 5376517
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||  ||||||||||||||||  |||||||||||||||||    
T  5376562 gccgacaccgctaataatttaagaaaataacataattcagtgtaat 5376517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 34298434 - 34298478
Alignment:
Q  22 ccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    ||||||||| ||||||||| ||||||  |||||||||||||||||    
T  34298434 ccgacaccactaataatttgagaaaatcacataattcagtgtaat 34298478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 92804 - 92849
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||  ||||||||| |||||| ||||||||||||||||||    
T  92804 gccgacaccgctaataatttgagaaaattacataattcagtgtaat 92849  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 27932232 - 27932277
Alignment:
Q  21 gccgacaccattaataatttaagaaaactacataattcagtgtaat 66  Q
    |||||||||  ||||||||| |||||| ||||||||||||||||||    
T  27932232 gccgacaccgctaataatttgagaaaattacataattcagtgtaat 27932277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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