View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_low_19 (Length: 326)

Name: NF15791_low_19
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_low_19
NF15791_low_19
[»] chr1 (3 HSPs)
chr1 (1-300)||(6240456-6240755)
chr1 (183-270)||(15243858-15243945)
chr1 (176-262)||(47900756-47900842)
[»] chr4 (3 HSPs)
chr4 (176-270)||(7355409-7355503)
chr4 (183-262)||(4224829-4224908)
chr4 (179-265)||(30499947-30500033)
[»] chr7 (6 HSPs)
chr7 (183-262)||(2478616-2478695)
chr7 (184-262)||(983705-983783)
chr7 (180-267)||(8858861-8858948)
chr7 (180-267)||(8859545-8859632)
chr7 (236-270)||(12866176-12866210)
chr7 (183-264)||(23103121-23103202)
[»] chr2 (1 HSPs)
chr2 (178-264)||(17558861-17558947)
[»] chr3 (1 HSPs)
chr3 (176-269)||(861919-862010)
[»] chr5 (2 HSPs)
chr5 (180-267)||(15608301-15608388)
chr5 (176-262)||(17468403-17468488)
[»] chr8 (1 HSPs)
chr8 (183-267)||(7634651-7634735)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 6240456 - 6240755
Alignment:
Q  1 ttgttttaatgtggatcatgtcattttgtttgaaagagataatgatgttaaacatctagaaataatgttgaagttcataaggaatcatgatatctaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6240456 ttgttttaatgtggatcatgtcattttgtttgaaagagataatgatgttaaacatctagaaatgatgttgaagttcataaggaatcatgatatctaaatt 6240555  T
Q  101 tgaaaacccctgaggccaaatggtctcatattgacattcatgagccaacattactaacacattgcaaacttatctatgaatgagaaattgagtgaatgca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  6240556 tgaaaacccctgaggccaaatggtctcatattgtcattcatgagccaacattactaacacattgcaaacttatctatgaatgagaaattaaatgaatgca 6240655  T
Q  201 tgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttatttgatggaaaagggtgaagaatggcattgaagatc 300  Q
    ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6240656 tgacctaaagcgtctaatcagtaactattcaggcatttatgggtttaattagtttttagtgttatttgatggaaaagggtgaagaatggcattgaagatc 6240755  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 15243858 - 15243945
Alignment:
Q  183 agaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttatttgat 270  Q
    ||||||||||||||||||||| ||||| |||||||||| | |||||| ||| |||||||| |||||||| ||||||||||||||||||    
T  15243858 agaaattgagtgaatgcatgacctaaaacatctaatcagtgactatttaggaatttatggttttaattaatttttagtgttatttgat 15243945  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 47900842 - 47900756
Alignment:
Q  176 atgaatgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgt 262  Q
    ||||| |||||| ||||||||||||||| ||||| |||||||||||  |||||| ||| |||||| | |||||||||||||||||||    
T  47900842 atgaacgagaaaatgagtgaatgcatgaactaaaacatctaatcaccgactatttaggaatttattgttttaattagtttttagtgt 47900756  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 7355503 - 7355409
Alignment:
Q  176 atgaatgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttatttgat 270  Q
    ||||| ||||||||||||||||||||| || |||||||||||||| | |||||| |   |||||||| |||||||| ||||||||||||||||||    
T  7355503 atgaacgagaaattgagtgaatgcatggtccaaagcatctaatcagtgactatttataaatttatggttttaattaatttttagtgttatttgat 7355409  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 4224829 - 4224908
Alignment:
Q  183 agaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgt 262  Q
    ||||| ||||||||||||||| ||||||||| ||||   | |||||| ||| |||||||| || ||||||||||||||||    
T  4224829 agaaactgagtgaatgcatgacctaaagcatttaatttgtgactattaaggaatttatggtttcaattagtttttagtgt 4224908  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 30499947 - 30500033
Alignment:
Q  179 aatgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttat 265  Q
    ||||||| ||||||||| || |||||||  |||| ||||| | |  ||||| ||| |||||||||||||||||| ||||||||||||    
T  30499947 aatgagatattgagtgactgtatgatctccagcacctaatgagtgtctatttaggaatttatgggtttaattagcttttagtgttat 30500033  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 2478695 - 2478616
Alignment:
Q  183 agaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgt 262  Q
    ||||||| ||||||||||||| ||||| |||||||||| | |||||| ||| |||||||| |||||||||||||||||||    
T  2478695 agaaattaagtgaatgcatgacctaaaacatctaatcagtgactatttaggaatttatggttttaattagtttttagtgt 2478616  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 983705 - 983783
Alignment:
Q  184 gaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgt 262  Q
    |||||||||||||| || ||||||||||||||||||| |  ||||| |||  ||||||| ||||||||||||| |||||    
T  983705 gaaattgagtgaatacacgatctaaagcatctaatcagtgtctatttaggattttatggttttaattagttttaagtgt 983783  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 8858861 - 8858948
Alignment:
Q  180 atgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttattt 267  Q
    |||||||||||||| | |||||||  || ||||||||||||   |||||| | | |||||| | ||||| ||||||||||||||||||    
T  8858861 atgagaaattgagttattgcatgacatatagcatctaatcagagactatttatgaatttattgttttaagtagtttttagtgttattt 8858948  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 8859632 - 8859545
Alignment:
Q  180 atgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttattt 267  Q
    |||||||||||||| | |||||||  || ||||||||||||   |||| | ||| |||||| | ||||| ||||||||||||||||||    
T  8859632 atgagaaattgagttattgcatgacatatagcatctaatcagagactacttaggaatttattgttttaagtagtttttagtgttattt 8859545  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 12866210 - 12866176
Alignment:
Q  236 tttatgggtttaattagtttttagtgttatttgat 270  Q
    ||||||| |||||||||||||||||||||||||||    
T  12866210 tttatggttttaattagtttttagtgttatttgat 12866176  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 23103121 - 23103202
Alignment:
Q  183 agaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgtta 264  Q
    ||||| ||||||||||||   ||||||||||||||| | |  ||||| |||  ||||| | |||||||||||||||||||||    
T  23103121 agaaaatgagtgaatgcaatgtctaaagcatctaattagtgcctatttaggattttatagttttaattagtttttagtgtta 23103202  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 17558947 - 17558861
Alignment:
Q  178 gaatgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgtta 264  Q
    |||||||||||||||| ||||||||  ||||| |||||||||| | |||||| | | |||||||| ||||| |||||||||||||||    
T  17558947 gaatgagaaattgagttaatgcatggcctaaaacatctaatcagtgactatttatgaatttatggttttaagtagtttttagtgtta 17558861  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 861919 - 862010
Alignment:
Q  176 atgaatgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttatttga 269  Q
    ||||| |||||||||| ||||||||||  ||||||||||||| || |  ||||||| |  ||||| |||||||||||||||| |||||||||||    
T  861919 atgaacgagaaattgaatgaatgcatggcctaaagcatctaaacaatgtctattcaagattttat-ggtttaattagttttt-gtgttatttga 862010  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 15608388 - 15608301
Alignment:
Q  180 atgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttattt 267  Q
    |||||||||||||||| |||||||  |  |||||||||| | | |||||| ||| |||||||  ||||| ||| ||||||||||||||    
T  15608388 atgagaaattgagtgattgcatgacatgtagcatctaataattgactatttaggaatttatgattttaaatagcttttagtgttattt 15608301  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 17468403 - 17468488
Alignment:
Q  176 atgaatgagaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgt 262  Q
    |||||| ||||||||||||||||| ||   ||||||||||||||| | |||||| ||| |||||  | |||||||| ||||||||||    
T  17468403 atgaataagaaattgagtgaatgcgtggcataaagcatctaatcagtgactatttaggaatttacagttttaatta-tttttagtgt 17468488  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 7634651 - 7634735
Alignment:
Q  183 agaaattgagtgaatgcatgatctaaagcatctaatcactaactattcaggcatttatgggtttaattagtttttagtgttattt 267  Q
    ||||||||||||| ||||||  ||||| | |||||| | | | |||| ||| |||||||| ||||| ||||||||||| ||||||    
T  7634651 agaaattgagtgattgcatggcctaaaccttctaattagtgattatttaggaatttatggttttaagtagtttttagtattattt 7634735  T

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