View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_low_2 (Length: 709)

Name: NF15791_low_2
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_low_2
NF15791_low_2
[»] chr6 (14 HSPs)
chr6 (13-307)||(26063838-26064133)
chr6 (13-307)||(26083807-26084102)
chr6 (306-508)||(26148173-26148375)
chr6 (306-576)||(26063550-26063809)
chr6 (306-576)||(26083519-26083778)
chr6 (306-590)||(25515221-25515516)
chr6 (115-307)||(25515545-25515737)
chr6 (71-308)||(25454973-25455219)
chr6 (306-508)||(25454743-25454946)
chr6 (586-694)||(25454577-25454683)
chr6 (637-694)||(26148097-26148154)
chr6 (275-307)||(25318711-25318743)
chr6 (275-307)||(26148404-26148436)
chr6 (28-59)||(25455633-25455664)
[»] chr8 (1 HSPs)
chr8 (126-186)||(33200899-33200959)
[»] chr2 (1 HSPs)
chr2 (127-186)||(3392153-3392212)
[»] chr4 (1 HSPs)
chr4 (92-172)||(17848205-17848285)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-144; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 26064133 - 26063838
Alignment:
Q  13 gagatgaactgcggcagctcgtagaccgtaaccaaggtatctatacaactaactcccaatttcgctagaatatctgctcaagcattgccctcaggaaaag 112  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26064133 gagaagaactgcggcagcatgtagaccgtaaccaaggtatctatacaactaactcccaatttcgctagaatatctgctcaagcattgccctcgggaaaag 26064034  T
Q  113 tctgatggagagaaaaattccaatctttcttcatgtaagctctgataa-tctccaacatattggcataatggtgaaagtgatgagtgttcattgatccta 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26064033 tctgatggagagaaaaattccaatctttcttcatgtaagctctgataaatctccaacatattggcataatggtgaaagtgatgagtgttcattgaaccta 26063934  T
Q  212 actgcaccacgtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagagcctgaatctctgcatgaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  26063933 actgcaccacgtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagatcctgaatttctgcatgaa 26063838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 26084102 - 26083807
Alignment:
Q  13 gagatgaactgcggcagctcgtagaccgtaaccaaggtatctatacaactaactcccaatttcgctagaatatctgctcaagcattgccctcaggaaaag 112  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26084102 gagaagaactgcggcagcatgtagaccgtaaccaaggtatctatacaactaactcccaatttcgctagaatatctgctcaagcattgccctcgggaaaag 26084003  T
Q  113 tctgatggagagaaaaattccaatctttcttcatgtaagctctgataa-tctccaacatattggcataatggtgaaagtgatgagtgttcattgatccta 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26084002 tctgatggagagaaaaattccaatctttcttcatgtaagctctgataaatctccaacatattggcataatggtgaaagtgatgagtgttcattgaaccta 26083903  T
Q  212 actgcaccacgtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagagcctgaatctctgcatgaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  26083902 actgcaccacgtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagatcctgaatttctgcatgaa 26083807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 306 - 508
Target Start/End: Complemental strand, 26148375 - 26148173
Alignment:
Q  306 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgtt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26148375 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgcc 26148276  T
Q  406 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26148275 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 26148176  T
Q  506 aac 508  Q
    |||    
T  26148175 aac 26148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 306 - 576
Target Start/End: Complemental strand, 26063809 - 26063550
Alignment:
Q  306 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgtt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26063809 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgcc 26063710  T
Q  406 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 505  Q
    ||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26063709 atgctagaagcaataactacattgcagtagca------------taacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 26063622  T
Q  506 aac-nnnnnnnnngtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaacca 576  Q
    |||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26063621 aacaaaaaaaaaagtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaacca 26063550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 306 - 576
Target Start/End: Complemental strand, 26083778 - 26083519
Alignment:
Q  306 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgtt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26083778 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgcc 26083679  T
Q  406 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 505  Q
    ||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083678 atgctagaagcaataactacattgcagtagca------------taacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 26083591  T
Q  506 aac-nnnnnnnnngtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaacca 576  Q
    |||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083590 aacaaaaaaaaaagtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaacca 26083519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 306 - 590
Target Start/End: Complemental strand, 25515516 - 25515221
Alignment:
Q  306 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaa-gaccaaatcagcctagtaaatgt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||     
T  25515516 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtcccttgatgagttcgaaaaggaccaaatcagcctagtaaatgc 25515417  T
Q  405 tatgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattata-gtcgaaaagaccgaccatagaaacttagataa 503  Q
     | ||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  25515416 cacgctagaagcaataactacattgcagtatcatcctctttatacaaacatgtattattccattatacgtcgaaaagaccgagcatagaaacttagataa 25515317  T
Q  504 gga---------acnnnnnnnnngtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaaccagctaactacttgta 590  Q
    |||         ||         || || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25515316 ggaaccaaaaatacaagaaaaaagtccataaccctgacctacacaatagcaatacaagaaacaataattgtaaatcaaaccagctaactacttgta 25515221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 115 - 307
Target Start/End: Complemental strand, 25515737 - 25515545
Alignment:
Q  115 tgatggagagaaaaattccaatctttcttcatgtaagctctgataatctccaacatattggcataatggtgaaagtgatgagtgttcattgatcctaact 214  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||||  |||||    
T  25515737 tgatggagagaaaaattccaatctttcatcttgtaagctctaataatcaccaacatattggcataatggtgaaagtgatgagtgctcaatgatattaact 25515638  T
Q  215 gcaccacgtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagagcctgaatctctgcatgaa 307  Q
    || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25515637 gctccacatgaagagaatcataatagaatataaacttccgggctttccaccacaacttcagaccaacaaggagagcctgaatctctgcatgaa 25515545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 71 - 308
Target Start/End: Complemental strand, 25455219 - 25454973
Alignment:
Q  71 atttcgctagaatatc-tgctcaagcattgccctcaggaaaagtctgatggagagaaaaattccaatctttcttcatgtaagctctgataatctccaaca 169  Q
    |||| ||||||||||| ||| |||| ||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25455219 attttgctagaatatcatgcccaagaatttccctcatgaagagtctgatggagagaaaaatttcaatctttcttcatgtaagctctgataatctccaaca 25455120  T
Q  170 ta-ttggcataatggtgaaagtgatgagtgttcattgatcctaactgcaccacgtgaagagaatcataatagcatataaacttc-------cgggctttc 261  Q
    || |||||||||||||||||| ||||| ||  ||||||| ||||||| ||||||| |||| ||||| |||||||||||| ||||       |  |||| |    
T  25455119 tatttggcataatggtgaaagagatgaatgcccattgatactaactgaaccacgtcaagaaaatcagaatagcatataaccttctgaaaagccagcttgc 25455020  T
Q  262 caccacaacttgagaccaacaaggagagcctgaatctctgcatgaaa 308  Q
    || |||||||||||||||||||||| ||| |||||||||| ||||||    
T  25455019 cagcacaacttgagaccaacaaggaaagcatgaatctctgtatgaaa 25454973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 306 - 508
Target Start/End: Complemental strand, 25454946 - 25454743
Alignment:
Q  306 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgtt 405  Q
    ||||||||||||||| |||  |||||||||||| |||||||||||||||| |||||||| ||||| |||| |||||||||||||||| || |||||||      
T  25454946 aaatccaaattgaaatgctccgtcataattccgttcaagtcctccaaatcttgcagtccctggattagttagaaaagaccaaatcagtcttgtaaatgcc 25454847  T
Q  406 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattata-gtcgaaaagaccgaccatagaaacttagataag 504  Q
    | |||||||| |||||| ||| ||||||| || ||||||||||||| ||| |||||| ||||  || || | |||||||| ||||||| | ||||||||     
T  25454846 acgctagaagtaataacgacactgcagtatcatcctctttaaacaagcatctattataccatcgtatgtagcaaagaccggccatagagatttagataaa 25454747  T
Q  505 gaac 508  Q
    ||||    
T  25454746 gaac 25454743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 586 - 694
Target Start/End: Complemental strand, 25454683 - 25454577
Alignment:
Q  586 ttgtaaagctttgaaatcctttgtgaatatctgcagtctttgtacacgttccagaccagaagatttgttggcaaattcctatcacagcctccgtaacagc 685  Q
    ||||| ||||||||||||||| ||||||| ||||  |||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  25454683 ttgtagagctttgaaatcctt-gtgaatacctgccatctttgtaca-gttcaagaccagaagacttgatggcaaattcctatcacagcctccataacagc 25454586  T
Q  686 caccataac 694  Q
     ||||||||    
T  25454585 aaccataac 25454577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 637 - 694
Target Start/End: Complemental strand, 26148154 - 26148097
Alignment:
Q  637 cagaccagaagatttgttggcaaattcctatcacagcctccgtaacagccaccataac 694  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26148154 cagaccagaagatttgttggcaaattcctatcacagccttcgtaacagccaccataac 26148097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 25318743 - 25318711
Alignment:
Q  275 gaccaacaaggagagcctgaatctctgcatgaa 307  Q
    |||||||||||||||||||||||||||||||||    
T  25318743 gaccaacaaggagagcctgaatctctgcatgaa 25318711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 26148436 - 26148404
Alignment:
Q  275 gaccaacaaggagagcctgaatctctgcatgaa 307  Q
    |||||||||||||||||||||||||||||||||    
T  26148436 gaccaacaaggagagcctgaatctctgcatgaa 26148404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 25455633 - 25455664
Alignment:
Q  28 agctcgtagaccgtaaccaaggtatctataca 59  Q
    ||||||||||||||||||||||||||||||||    
T  25455633 agctcgtagaccgtaaccaaggtatctataca 25455664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 33200959 - 33200899
Alignment:
Q  126 aaaattccaatctttcttcatgtaagctctgataatctccaacatattggcataatggtga 186  Q
    |||||| ||||| |||||||||||| || |||||||||||| |||||| ||||||| ||||    
T  33200959 aaaatttcaatccttcttcatgtaatctttgataatctccatcatattagcataattgtga 33200899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 3392212 - 3392153
Alignment:
Q  127 aaattccaatctttcttcatgtaagctctgataatctccaacatattggcataatggtga 186  Q
    ||||| |||||||| |||||| || |||| ||||||||||||||||| ||||||| ||||    
T  3392212 aaatttcaatctttattcatgaaatctctaataatctccaacatattagcataatagtga 3392153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 17848205 - 17848285
Alignment:
Q  92 aagcattgccctcaggaaaagtctgatggagagaaaaattccaatctttcttcatgtaagctctgataatctccaacatat 172  Q
    ||||||||||||||  || ||| | |||||||||| || |||||| |||||||||| || || | ||||||| ||||||||    
T  17848205 aagcattgccctcactaagagtattatggagagaataaatccaatatttcttcatgcaatctttaataatcttcaacatat 17848285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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