View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_23 (Length: 304)
Name: NF15791_low_23
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 30259613 - 30259897
Alignment:
| Q |
6 |
atagtaattactataaaaataccttcacatgaactcgattttggtatatgtggaggatctaatttgtgatagttacaaattatgagactaaattgtctaa |
105 |
Q |
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| T |
30259613 |
atagtaattactataaaaataccttcacatgaactcgattttggtatatgtggaggatctaatttgtgatagttacaaattatgagactaaattgtctaa |
30259712 |
T |
|
| Q |
106 |
tcactcaataatacacaaaatattgataaacccaccataatgtgattttggcactccagggccactattatattttggtatgtttaatccattnnnnnnn |
205 |
Q |
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| T |
30259713 |
tcactcaataatacacaaaatattgataaacccaccataatgtgattttggcactccagtgccactattatattttggtatgtttaatccattaaaaaaa |
30259812 |
T |
|
| Q |
206 |
ntaagaatatgatatgctaagttcagttatacaatatttgatttgtaaaaaatatttcatgaacatgataaatcgaggtatgaaat |
291 |
Q |
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| T |
30259813 |
a-aagaatatgatatgctaatttcagttatacaatatttgatttgtaaaaaatatttcatgaacatgataaatcgaggtatgaaat |
30259897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 33742610 - 33742582
Alignment:
| Q |
227 |
ttcagttatacaatatttgatttgtaaaa |
255 |
Q |
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| T |
33742610 |
ttcagttatacaatatttgatttgtaaaa |
33742582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 26180225 - 26180253
Alignment:
| Q |
227 |
ttcagttatacaatatttgatttgtaaaa |
255 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26180225 |
ttcagttatacaatatttgatttgtaaaa |
26180253 |
T |
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