View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_low_24 (Length: 300)

Name: NF15791_low_24
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_low_24
NF15791_low_24
[»] chr7 (7 HSPs)
chr7 (1-286)||(33399550-33399835)
chr7 (1-284)||(33395666-33395946)
chr7 (80-281)||(33441945-33442146)
chr7 (80-281)||(33452165-33452366)
chr7 (1-56)||(33395567-33395622)
chr7 (1-51)||(33399358-33399408)
chr7 (1-34)||(33395474-33395507)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 33399550 - 33399835
Alignment:
Q  1 catggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399550 catggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgtt 33399649  T
Q  101 ttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaaggttgtcaatgcaattttatc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33399650 ttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccataggttgtcaatgcaattttatc 33399749  T
Q  201 atgtccacttgttaacactggtgctgcccaaggaactgagcaactctggaaatcacttccattcactctcaccacactgtccttcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33399750 atgtccacttgttaacactggtgctgcccaaggaactgagcaactctggaaatcacttccattcactctcaccacattgtccttcc 33399835  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 33395666 - 33395946
Alignment:
Q  1 catggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgtt 100  Q
    ||||| ||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||   || ||||| ||||||||   |||     
T  33395666 catggcgcatttgaaggtggtgctgcttcaggagtcggcacaggtgagggtgacggggaggctgaaggtgagg---gtactggagaccaaccaaactgtg 33395762  T
Q  101 ttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaaggttgtcaatgcaattttatc 200  Q
     ||||   || ||||||||||||||||| |||   | ||||||||  ||| |||||||||||||||||||||| ||| |||||||||||  |||| ||||    
T  33395763 gtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtaccatcttcttccataggttgtcaataaaattgtatc 33395862  T
Q  201 atgtccacttgttaacactggtgctgcccaaggaactgagcaactctggaaatcacttccattcactctcaccacactgtcctt 284  Q
    ||||||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  33395863 atgtccactagttaacactggtgctctccaaggaattgagcaactctggaaatcacttccattcactctcaccacattgtcctt 33395946  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 80 - 281
Target Start/End: Original strand, 33441945 - 33442146
Alignment:
Q  80 ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa 179  Q
    ||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |    
T  33441945 ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata 33442044  T
Q  180 ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgcccaaggaactgagcaactctggaaatcacttccattcactctcaccacactg 279  Q
    |||||| | |  |||||| || || ||||| |||||||| ||||||| | |||||||||||||||||| ||| |||||||||||||||||||| ||| ||    
T  33442045 ggttgtaattataattttgtcttgcccactggttaacacaggtgctgtcaaaggaactgagcaactcttgaagtcacttccattcactctcacaacattg 33442144  T
Q  280 tc 281  Q
    ||    
T  33442145 tc 33442146  T

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Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 80 - 281
Target Start/End: Original strand, 33452165 - 33452366
Alignment:
Q  80 ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa 179  Q
    ||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |    
T  33452165 ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata 33452264  T
Q  180 ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgcccaaggaactgagcaactctggaaatcacttccattcactctcaccacactg 279  Q
    |||||| | |  |||||| || || ||||| |||||||| ||||||| | |||||||||||||||||| ||| |||||||||||||||||||| ||| ||    
T  33452265 ggttgtaattataattttgtcttgcccactggttaacacaggtgctgtcaaaggaactgagcaactcttgaagtcacttccattcactctcacaacattg 33452364  T
Q  280 tc 281  Q
    ||    
T  33452365 tc 33452366  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33395567 - 33395622
Alignment:
Q  1 catggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg 56  Q
    |||||||||||||||| ||||||||||||| |||||||   |||||||||||||||    
T  33395567 catggtgcatttgaagacggtgctgcttcatgggccggtgtaggtgagggtgaggg 33395622  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33399358 - 33399408
Alignment:
Q  1 catggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggt 51  Q
    ||||||||||||||||| |||||||||| |||||||||   ||||||||||    
T  33399358 catggtgcatttgaaggtggtgctgcttgaggggccggtgtaggtgagggt 33399408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33395474 - 33395507
Alignment:
Q  1 catggtgcatttgaaggcggtgctgcttcagggg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  33395474 catggtgcatttgaaggcggtgctacttcagggg 33395507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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