View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_28 (Length: 290)
Name: NF15791_low_28
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 112 - 274
Target Start/End: Original strand, 6188300 - 6188462
Alignment:
| Q |
112 |
caaattcagcatacaatataactatatacagtttcaaaagttacttaggaatatatgtaaacataagaattaatgtgagtttagaggaattaaatggaat |
211 |
Q |
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| T |
6188300 |
caaagtcagcatacaatataactatgtacagtttcaaaagttacttaggagtatatgtaaacataagaattaatatgagtttagaggaattaaatggaat |
6188399 |
T |
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| Q |
212 |
acttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagctttc |
274 |
Q |
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| T |
6188400 |
acttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagctttc |
6188462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 6179588 - 6179688
Alignment:
| Q |
171 |
aacataagaattaatgtgagtttagaggaattaaatggaatacttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagc |
270 |
Q |
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| T |
6179588 |
aacatgagaattaatg--agtttagaggaat-aaattcaatacgtaccgatatttgcgagagtcccatccagatatattggcagccaatttgagagcagc |
6179684 |
T |
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| Q |
271 |
tttc |
274 |
Q |
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|||| |
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| T |
6179685 |
tttc |
6179688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 6145354 - 6145425
Alignment:
| Q |
200 |
attaaatggaatacttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagct |
271 |
Q |
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| T |
6145354 |
attaaattaaatacataccgatatttgcgagagtcccatccagatatattggcagccatcttgagagcagct |
6145425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 6188200 - 6188242
Alignment:
| Q |
12 |
tgaacaaggagactagcccttgacatgtagcaagacaactgtt |
54 |
Q |
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| T |
6188200 |
tgaacaaggagactagcccttgacatgtagcaagacaactgtt |
6188242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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