View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_29 (Length: 285)
Name: NF15791_low_29
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 38748207 - 38747926
Alignment:
| Q |
1 |
tttgaatgctggcttcatcctgctagatacagaactgaagcatgcaaagatggtaaaaactgtaagagaaaagtttgtttctttgcacacactcctcgtc |
100 |
Q |
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| T |
38748207 |
tttgaatgctggcttcatcctgctagatacagaactgaagcatgcaaagatggtaaaaactgtaagagaaaagtttgtttctttgcacacactcctcgtc |
38748108 |
T |
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| Q |
101 |
aattaagaatccttccaattacatcatcttctccatcttcaaatgaacatttttcatgcaacaagaaaaataacaagcttttgaataaccatgttgcttc |
200 |
Q |
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| T |
38748107 |
aattaagaatccttccagttacatcat---------cttcaaatgaacatttttcatgcaacaagaaaaataacaagcttttgaataaccatgttgcttc |
38748017 |
T |
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| Q |
201 |
aaaatcaaacaattgttgtttgttttgtcactgtggtggtaat------ggtaatggtaatggtgctaataattctccaacttcaacactt |
285 |
Q |
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| T |
38748016 |
aaaatcaaacaattgttgtttgttttgtcactgtggtggtaatggtaacggtaatggtaatggtgctaataattctccaacttcaacactt |
38747926 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 30385759 - 30385830
Alignment:
| Q |
31 |
agaactgaagcatgcaaagatggtaaaaactgtaagagaaaagtttgtttctttgcacacactcctcgtcaa |
102 |
Q |
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| T |
30385759 |
agaactgaagcttgtaaagatggtaaaaattgtaagcgaaaaatttgtttttttgctcatacacctcgtcaa |
30385830 |
T |
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