View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_3 (Length: 578)
Name: NF15791_low_3
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 165 - 571
Target Start/End: Complemental strand, 6188059 - 6187653
Alignment:
| Q |
165 |
agagatgatactcaagtcattggcaatattatggaagatgttttgcagaagttggccctcatgtaccctaatgaactgaaagatattgttaaagttgatg |
264 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6188059 |
agagatgatactcaagtcattggcaatattgtggaagatgttttgcagaagttggccctcatgtaccctaatgaactgaaagatattgttaaagttgatg |
6187960 |
T |
|
| Q |
265 |
agaacagtgaacatattgaattattattgaaaacaataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6187959 |
agaacagtgaacatattgaattattattgaaaacaataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtt |
6187860 |
T |
|
| Q |
365 |
tgccaagaactttgcccattatgacaatgtatgcttcttggaaaagataagcgaagactcggaaaagtttggaccaatatatgttcataatcagcttctt |
464 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6187859 |
ttccaagaactttgcccattatgacaatgtatgcttcttggaaaagataagcgaagactcggaaaagtttggaccaatatatgtttgtaatcagcttctt |
6187760 |
T |
|
| Q |
465 |
cgtgagctactgaagcgagaaattacagcgtctgatgttcacagacttcacacgttcatcacgaggaggctctttcgcaaaaaagttttcattgttcttg |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6187759 |
cgtgagctactgaagcgagaaattacagcgtctgatgttcacggacttcacacattcatcacgaggaggctctttcgcaaaaaagttttcattgttcttg |
6187660 |
T |
|
| Q |
565 |
atgatgt |
571 |
Q |
| |
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||||||| |
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| T |
6187659 |
atgatgt |
6187653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 168 - 571
Target Start/End: Complemental strand, 6179266 - 6178863
Alignment:
| Q |
168 |
gatgatactcaagtcattggcaatattatggaagatgttttgcagaagttggccctcatgtaccctaatgaactgaaagatattgttaaagttgatgaga |
267 |
Q |
| |
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|||||| |||||||||| | || ||| |||||||||||||||| |||||| |||||||||| ||||||||||| ||||| |||||| ||||||||||| |
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| T |
6179266 |
gatgattctcaagtcatcgataaaattgtggaagatgttttgcaaaagttgtccctcatgtatcctaatgaactcaaagaccttgttacagttgatgaga |
6179167 |
T |
|
| Q |
268 |
acagtgaacatattgaattattattgaaaacaataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgc |
367 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6179166 |
acagtgaagatattgaattattactgaaaacaataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgc |
6179067 |
T |
|
| Q |
368 |
caagaactttgcccattatgacaatgtatgcttcttggaaaagataagcgaagactcggaaaagtttggaccaatatatgttcataatcagcttcttcgt |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |
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| T |
6179066 |
caagaactttgcccattatgacaatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggaccaatatatgttcgtaatcagcttcttcgt |
6178967 |
T |
|
| Q |
468 |
gagctactgaagcgagaaattacagcgtctgatgttcacagacttcacacgttcatcacgaggaggctctttcgcaaaaaagttttcattgttcttgatg |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6178966 |
gagctactgaagcgagaaattacagcgtctgatgttcatggacttcacacgttcatcaagaggaggctctttcgcaaaaaagttttcattgtacttgatg |
6178867 |
T |
|
| Q |
568 |
atgt |
571 |
Q |
| |
|
|||| |
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| T |
6178866 |
atgt |
6178863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 175 - 571
Target Start/End: Complemental strand, 6141202 - 6140806
Alignment:
| Q |
175 |
ctcaagtcattggcaatattatggaagatgttttgcagaagttggccctcatgtaccctaatgaactgaaagatattgttaaagttgatgagaacagtga |
274 |
Q |
| |
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|||||||||| | ||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||| ||| |||||||||||||| |||||| ||| |
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| T |
6141202 |
ctcaagtcatcgacaatattgtggaagatgttttgcagaaattgtccctcatgtatcctaatgaactgagagaccttgttaaagttgataagaacattga |
6141103 |
T |
|
| Q |
275 |
acatattgaattattattgaaaacaataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaac |
374 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6141102 |
acatattgaattattactgaaaacaataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaac |
6141003 |
T |
|
| Q |
375 |
tttgcccattatgacaatgtatgcttcttggaaaagataagcgaagactcggaaaagtttggaccaatatatgttcataatcagcttcttcgtgagctac |
474 |
Q |
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||| || ||||||| ||||||||||||||||||||||||| ||||| || |||||||| |||| ||||||||||| |||| |||||||| ||||||||| |
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| T |
6141002 |
tttccctattatgataatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctac |
6140903 |
T |
|
| Q |
475 |
tgaagcgagaaattacagcgtctgatgttcacagacttcacacgttcatcacgaggaggctctttcgcaaaaaagttttcattgttcttgatgatgt |
571 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6140902 |
tgaagcagaaaattacagcatctgatgttcatggacttcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgt |
6140806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6188223 - 6188115
Alignment:
| Q |
1 |
gtcaagggctagtctccttgttcaggtccagtcgaatcataatcagttcaccaacacaatgatctggttgatgggttgatcctgttatagaattttagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6188223 |
gtcaagggctagtctccttgttcaggtccagtcgaatcataatcagttcaccaacacaatgatctggtagatgggttgatcctgttatagaattttagga |
6188124 |
T |
|
| Q |
101 |
acttaccaa |
109 |
Q |
| |
|
||||||||| |
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|
| T |
6188123 |
acttaccaa |
6188115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 6062782 - 6062699
Alignment:
| Q |
305 |
aagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttgcccattatga |
388 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||| ||||||| || ||||| |
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|
| T |
6062782 |
aagaattggaatttggggcatgggaggaataggaaagacaaccatagccagacagatgtttgccaagcactttgcacaatatga |
6062699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 490
Target Start/End: Complemental strand, 6046540 - 6046354
Alignment:
| Q |
304 |
caagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttctt |
403 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||| ||| ||||||| || ||||| | | ||||| | |
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| T |
6046540 |
caagaattggaatttggggcatgggtggaatagggaagacaaccatagccagacagatgtttgcaaagcactttgcacaatatgaaagcgcttgctttat |
6046441 |
T |
|
| Q |
404 |
ggaaaagataagcgaagactcggaaaagtttggaccaatatatgttcataatcagcttcttcgtgagctactgaagcgagaaattac |
490 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||||| || | | |||| |||||||| ||||||| || |||||| ||||||| |
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|
| T |
6046440 |
ggaaaatgtaagtgaagaaatagaaaagtttggaccaaggtacatccgtaataagcttcttagtgagctgcttaagcgacaaattac |
6046354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 6087960 - 6087886
Alignment:
| Q |
305 |
aagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttgc |
379 |
Q |
| |
|
|||||||||||| ||||||||| | ||||| ||||||||||||||||| | ||| |||||||||||| ||||||| |
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|
| T |
6087960 |
aagaattggaatatggggcatgggaggaatcggaaagacaaccatagccagacaaatgtttgccaagcactttgc |
6087886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 6123760 - 6123822
Alignment:
| Q |
303 |
ccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgttt |
365 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||||| ||||||||||||| ||| |||||| |
|
|
| T |
6123760 |
ccaagaattggaatttggggtatggatggattaggaaaaacaaccatagcaagacaaatgttt |
6123822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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