View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_30 (Length: 279)
Name: NF15791_low_30
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 252
Target Start/End: Original strand, 3959292 - 3959541
Alignment:
| Q |
3 |
ttatctgccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgatactctgttgaggtgtcatctctgttattctcag |
102 |
Q |
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| T |
3959292 |
ttatctgccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgatactctgttgaggtgtcatctctgttattatcag |
3959391 |
T |
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| Q |
103 |
taaataaactgtcatcaataggactggagtgaggtgcagctcccttttgcagaatgaaacacaacaaagtttaactcagaggcatggtttataatactgg |
202 |
Q |
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| T |
3959392 |
taaataaactgtcatcaacaggactggagtgaggtgcagctcccttttgctgaatgagacacaacaaagtttaactcagaggcatggtttataatactgg |
3959491 |
T |
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| Q |
203 |
ttgtgtctttagttccctcgttttctatgttcccattttgaggtaaactg |
252 |
Q |
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| T |
3959492 |
ttgtgtctttagttccctccttttctatgttcccattttgaggtaaactg |
3959541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 19167905 - 19167758
Alignment:
| Q |
3 |
ttatctgccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgatactctgttgaggtgtcatctctgttattctcag |
102 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
19167905 |
ttatttgccaattgggaacatcccacatcagcctctttgtttgcctaaaggctgactaaatttagatactctgttaaactgtcatctctgttattctcag |
19167806 |
T |
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| Q |
103 |
taaataaactgtcatcaataggactggagtgaggtgcagctccctttt |
150 |
Q |
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| T |
19167805 |
taaataaactgtcatcaacaagattggagtgaggtgcaactccctttt |
19167758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 19167705 - 19167640
Alignment:
| Q |
188 |
ggtttataatactggttgtgtctttagttccctcgttttctatgttccc-attttgaggtaaactg |
252 |
Q |
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||||||||||| ||||||||||||||||||| || ||||| ||||||| ||||||| |||||||| |
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| T |
19167705 |
ggtttataatattggttgtgtctttagttccttccatttctttgttcccaattttgaagtaaactg |
19167640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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