View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_35 (Length: 250)
Name: NF15791_low_35
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_35 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 16111331 - 16111087
Alignment:
| Q |
5 |
tctagaataatataaatgttaagaagttgtaattaagtaggaccataatattctggataacaattatattgttaagttataagctagatagtaaatcaat |
104 |
Q |
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| T |
16111331 |
tctagaataatataaatgttaagaagttgtaattaagtaggaccataatattctggataacaattatattgttaagttataagctggatagtaaatcaat |
16111232 |
T |
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| Q |
105 |
attaatggttagttgaaggaccaaggaactctggatataaagtagttatatttgattatgaccagaatgttttggagaaattattaataagattaataaa |
204 |
Q |
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| T |
16111231 |
attaatggttagttgaaggaccaaggaactctggatataaagcagttatatttgattatgatcagaatgttctggagaaattattaataagattaataaa |
16111132 |
T |
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| Q |
205 |
catgataatgtgtttttagtgtttaaacaaataataaagagaaaat |
250 |
Q |
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| T |
16111131 |
catgataatgt-tttttagtgtttaaacaaataataaagagaaaat |
16111087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 26811 - 27034
Alignment:
| Q |
13 |
aatataaatgttaagaagttgtaattaagtaggaccataatattctggataacaattatattgttaagttataagctagatagtaaatcaatattaatgg |
112 |
Q |
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| T |
26811 |
aatataaaagttaagcagtagtaattaataaagatcaaaatattctcgataacaattatatagtaaagttataagctgaataataaatcaatattaatgg |
26910 |
T |
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| Q |
113 |
ttagttgaaggaccaaggaactctggatataaagtagttatatttgattatgaccagaatgttttggagaaattattaataagattaa-taaacatgata |
211 |
Q |
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| T |
26911 |
ttagttgaaggaccaaataactctggatacatagcagttatatttgattaggacaagaatattatagaga----attaataaggttaattaaacgtgata |
27006 |
T |
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| Q |
212 |
atgtgtttttagtgtttaaacaaataata |
240 |
Q |
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| T |
27007 |
gtgtgtgtttagtgttt-aacaaataata |
27034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 10338626 - 10338557
Alignment:
| Q |
43 |
aggaccataatattctggataacaattatattgttaagttataagctagatagtaaatcaatattaatgg |
112 |
Q |
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| T |
10338626 |
aggaccaaaatattctagatatcaattatatagttaagttataagctaaataataaatcaatattaatgg |
10338557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 21667583 - 21667622
Alignment:
| Q |
207 |
tgataatgtgtttttagtgtttaaacaaataataaagaga |
246 |
Q |
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| T |
21667583 |
tgataatgtgtgtttagtgtttaaacaaataataaagaga |
21667622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 21676347 - 21676386
Alignment:
| Q |
207 |
tgataatgtgtttttagtgtttaaacaaataataaagaga |
246 |
Q |
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| T |
21676347 |
tgataatgtgtgtttagtgtttaaacaaataataaagaga |
21676386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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