View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_39 (Length: 242)
Name: NF15791_low_39
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 2264333 - 2264545
Alignment:
| Q |
36 |
actgtgaaggatatggagaccttcatatttaattttgaggcaaataccttgaacacaaagcttacatata------acaagtagactcaagaagatttta |
129 |
Q |
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| T |
2264333 |
actgtgaaggatatggagaccttcatattcaattttgaggcaaataccttgaacacaaagcttacatataagtataacaagtagactcaagaagatttta |
2264432 |
T |
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| Q |
130 |
gaaaccgaaccaaaacaaatcatttttagtggttggtttggatttatttttctgaaaaaccgatccaaattgattgtatgggggacgatcagaaatgaag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2264433 |
gaaaccgaaccaaaacaaatcatttttagtggttggtttggatttatttttctgaaaaaccgatccaaattgattgtatgggggacgatcagaaatgaag |
2264532 |
T |
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| Q |
230 |
tgatgaagaagat |
242 |
Q |
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||||||||||||| |
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| T |
2264533 |
tgatgaagaagat |
2264545 |
T |
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