View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_low_42 (Length: 238)

Name: NF15791_low_42
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_low_42
NF15791_low_42
[»] chr2 (4 HSPs)
chr2 (1-221)||(23859640-23859860)
chr2 (119-221)||(31486664-31486762)
chr2 (119-221)||(31488948-31489046)
chr2 (186-220)||(34576919-34576953)
[»] chr8 (3 HSPs)
chr8 (119-221)||(36377487-36377585)
chr8 (128-221)||(21268434-21268523)
chr8 (120-221)||(36379772-36379869)
[»] chr7 (3 HSPs)
chr7 (128-221)||(8414795-8414884)
chr7 (128-221)||(36464528-36464617)
chr7 (128-221)||(3934744-3934833)
[»] chr1 (3 HSPs)
chr1 (128-221)||(29833380-29833469)
chr1 (119-221)||(734883-734981)
chr1 (186-220)||(419245-419279)
[»] chr5 (4 HSPs)
chr5 (120-221)||(23164545-23164642)
chr5 (119-221)||(22600693-22600791)
chr5 (119-220)||(11850213-11850310)
chr5 (128-209)||(37207662-37207739)
[»] chr3 (2 HSPs)
chr3 (130-173)||(39578235-39578278)
chr3 (130-221)||(18966429-18966518)
[»] scaffold0312 (1 HSPs)
scaffold0312 (186-220)||(11292-11326)
[»] scaffold0050 (1 HSPs)
scaffold0050 (119-217)||(31433-31527)
[»] chr4 (1 HSPs)
chr4 (119-179)||(8739233-8739293)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23859640 - 23859860
Alignment:
Q  1 atattataatattcaatttagttaaaataatataatatacttgacttattcgttaattaacaaactaacacagtagcacttccatttaatgtaattttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23859640 atattataatattcaatttagttaaaataatataatatacttgacttattcgttaattaacaaactaacacagtagcacttccatttaatgtaattttct 23859739  T
Q  101 ctaacttgcataatatacatgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23859740 ctaacttgcataatatacatgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaa 23859839  T
Q  201 gaataatatgggagtctctag 221  Q
    |||||||||||||||||||||    
T  23859840 gaataatatgggagtctctag 23859860  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 31486664 - 31486762
Alignment:
Q  119 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 218  Q
    |||||||| |||| |||||||  |||||||| ||||||||||||||  ||||||| |||    |||||||||||| |||| |||||||||| | ||||||    
T  31486664 atgatagagaatggtgaagaataatatggaagactctagaatactagggaataatgtgg----aagcctctagaagactagagaataatatagaagtctc 31486759  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 31488948 - 31489046
Alignment:
Q  119 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 218  Q
    |||||||| |||| |||||||  |||||||| ||||||||||||||  ||||||| |||    ||| ||||| || ||||||||||||||| | ||||||    
T  31488948 atgatagagaatggtgaagaataatatggaagactctagaatactagggaataatgtgg----aagtctctaaaagactaaagaataatatagaagtctc 31489043  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 34576953 - 34576919
Alignment:
Q  186 ctctagaacactaaagaataatatgggagtctcta 220  Q
    |||||||||||||||||||||||||| ||||||||    
T  34576953 ctctagaacactaaagaataatatggaagtctcta 34576919  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 36377585 - 36377487
Alignment:
Q  119 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 218  Q
    |||||||| |||| |||||||  |||||||| ||||||||||||||| ||||||| |||    ||| |||||||| ||||||||||||||| | ||||||    
T  36377585 atgatagagaatggtgaagaataatatggaagactctagaatactaaggaataatgtgg----aagtctctagaagactaaagaataatatagaagtctc 36377490  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 21268523 - 21268434
Alignment:
Q  128 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctag 221  Q
    |||| |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||||||||||||||||||| | |||||||||    
T  21268523 aatggtgaagaataatatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaagaataatatagaagtctctag 21268434  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 36379869 - 36379772
Alignment:
Q  120 tgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctct 219  Q
    ||||||| |||| |||||||  |||||||| ||||||||||||||  ||||||| |||    ||| |||||||| ||||||||||||||| | |||||||    
T  36379869 tgatagagaatggtgaagaataatatggaagactctagaatactagggaataatgtgg----aagtctctagaagactaaagaataatatagaagtctct 36379774  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 8414884 - 8414795
Alignment:
Q  128 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctag 221  Q
    ||||||||||||  |||||||| ||||||||||||||  ||||||| ||||| ||    ||||||||||||||||||||||| | |||||||||    
T  8414884 aatgatgaagaataatatggaagactctagaatactagagaataatgtggaagta----tctagaacactaaagaataatatagaagtctctag 8414795  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 36464617 - 36464528
Alignment:
Q  128 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctag 221  Q
    ||||||||| ||  |||||||| ||||||||||||||  ||||||| ||||| |    ||||||||||||||| |||||||| | |||||||||    
T  36464617 aatgatgaaaaataatatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaataataatatagaagtctctag 36464528  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 3934744 - 3934833
Alignment:
Q  128 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctag 221  Q
    ||||||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||||| || ||||||    
T  3934744 aatgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagt----ctctagaagactaaagaataatatggaagactctag 3934833  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 29833469 - 29833380
Alignment:
Q  128 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctag 221  Q
    ||||||||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||||||||||||||||||| | |||||||||    
T  29833469 aatgatgaagaataatatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaagaataatatagaagtctctag 29833380  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 734981 - 734883
Alignment:
Q  119 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 218  Q
    |||||||| ||||||||||||  |||||||| ||||||||||||||  ||||||| ||||| |    || ||||| ||||||||||||||| | ||||||    
T  734981 atgatagagaatgatgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctttagaagactaaagaataatatagaagtctc 734886  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 419279 - 419245
Alignment:
Q  186 ctctagaacactaaagaataatatgggagtctcta 220  Q
    |||||||||||||||||||||||||| ||||||||    
T  419279 ctctagaacactaaagaataatatggaagtctcta 419245  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 23164642 - 23164545
Alignment:
Q  120 tgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctct 219  Q
    ||||||| |||| |||||||  |||||||| ||||||||||||||  ||||||| |||    ||| |||||||| ||||||||||||||| | |||||||    
T  23164642 tgatagagaatggtgaagaataatatggaagactctagaatactagggaataatgtgg----aagtctctagaagactaaagaataatatagaagtctct 23164547  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 22600693 - 22600791
Alignment:
Q  119 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 218  Q
    |||||||| ||||||||||||  |||||||| ||||||||||| ||  ||||||| |||    ||| |||||||| |||||| |||||||| | ||||||    
T  22600693 atgatagagaatgatgaagaataatatggaagactctagaatattagggaataatgtgg----aagtctctagaagactaaataataatatagaagtctc 22600788  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 11850310 - 11850213
Alignment:
Q  119 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 218  Q
    |||||||| |||| |||||||  |||||||| ||||| ||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | ||||||    
T  11850310 atgatagagaatggtgaagaataatatggaagactcttgaatactatggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctc 11850215  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 37207662 - 37207739
Alignment:
Q  128 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatat 209  Q
    ||||||||||||  |||||||| ||||||||||||||  ||||||| |||    ||| |||||||| |||||||||||||||    
T  37207662 aatgatgaagaataatatggaagactctagaatactagggaataatgtgg----aagtctctagaagactaaagaataatat 37207739  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 39578235 - 39578278
Alignment:
Q  130 tgatgaagaaagatatggaacactctagaatactaatgaataat 173  Q
    |||||||||| ||||||||| ||||||||||||||| |||||||    
T  39578235 tgatgaagaatgatatggaagactctagaatactaaagaataat 39578278  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 18966518 - 18966429
Alignment:
Q  130 tgatgaagaaagatatggaa--cactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctag 221  Q
    ||||||||||  ||||||||  | |||||||||||||| ||||||| ||||| |    ||||||||||| ||||||||||| || |||||||||    
T  18966518 tgatgaagaataatatggaagtctctctagaatactaaagaataatgtggaagt----ctctagaacaccaaagaataatagggaagtctctag 18966429  T

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Target: scaffold0312 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 11292 - 11326
Alignment:
Q  186 ctctagaacactaaagaataatatgggagtctcta 220  Q
    |||||||||||||||||||||||||| ||||||||    
T  11292 ctctagaacactaaagaataatatggaagtctcta 11326  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 31433 - 31527
Alignment:
Q  119 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtct 217  Q
    |||||| | ||||||||||||  ||||||||| ||||| || ||||| ||| ||| ||||| |    |||||||||||| ||||||||||||| |||||    
T  31433 atgataaagaatgatgaagaataatatggaactctctaaaacactaaagaacaatgtggaagt----ctctagaacactcaagaataatatggaagtct 31527  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 8739233 - 8739293
Alignment:
Q  119 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaa 179  Q
    |||||||| ||||||||||||  || ||||   ||||||||||||||||||||||| ||||    
T  8739233 atgatagagaatgatgaagaataatgtggatgtctctagaatactaatgaataataaggaa 8739293  T

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