View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_44 (Length: 237)
Name: NF15791_low_44
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 19203448 - 19203268
Alignment:
| Q |
13 |
gttagttgttctgaattttctttccacgcatcttattggacggt-aaaaatgcattgcaaatgcatgccagccgcatatatatctaacttgttgttacaa |
111 |
Q |
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| T |
19203448 |
gttagttgttctgaattttctttccacgcatcttattggatggtaaaaaatgcattgcaaatgcatgccag----acacatatctaacttgttgttacaa |
19203353 |
T |
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| Q |
112 |
tatttaccatgataatggtggcaacaagattgaaaaagctagtttttcaaggctagtttgcaataagttgaatattgaatatgaa |
196 |
Q |
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| T |
19203352 |
tatttaccatgataatggtggcaacaagattggaaaagctagtttttcaaggctagtttgcaataagttgaatattgaatatgaa |
19203268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 19199765 - 19199558
Alignment:
| Q |
13 |
gttagttgttctgaattttctttccacgcatcttattggacggtaaaaatgcattgcaaatgcatgccagccgcatatatatctaacttgttgttacaat |
112 |
Q |
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| T |
19199765 |
gttagttactctgaattttcttctcacacatcttattggatggtaaacatgtattgcaaatatattgcagtc--atatatatcttgcttattgttacaat |
19199668 |
T |
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| Q |
113 |
atttaccatgataatggtggcaacaagattgaaaaagctagtttttcaaggctagtttgcaataagttgaatattgaatatgaaaacttttgagaatcca |
212 |
Q |
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| T |
19199667 |
atttaccatgtaaatggtggtaacaagattgaaaaagctagtttttcaacgttattttgcaataaattaaatattgaatatgaaaactattgagaaccct |
19199568 |
T |
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| Q |
213 |
tgtttgatca |
222 |
Q |
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| T |
19199567 |
tgtttgatca |
19199558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 237
Target Start/End: Complemental strand, 19203270 - 19203239
Alignment:
| Q |
206 |
gaatccatgtttgatcaacaagaatggaatct |
237 |
Q |
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| T |
19203270 |
gaatccatgtttgatcaacaagaatggaatct |
19203239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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