View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15791_low_8 (Length: 422)
Name: NF15791_low_8
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15791_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 51100963 - 51100642
Alignment:
| Q |
12 |
ggagcaggagtgagacttggaaaatatgagttgggtaggattcttggtgagggcaattttggtaaagttaagtttgctaggaacactgattctggacaac |
111 |
Q |
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| T |
51100963 |
ggagaaggagtgagacttggaaaatatgagttgggtaggattcttggtgagggcaattttggtaaagttaagtttgctaggaacactgattctggacaac |
51100864 |
T |
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| Q |
112 |
cttatgctattaagattattgataagaaaaagatcattgatctcaatatcacaaaccaggtttgtttcaaatgccttttctctttctcattcgatcgtct |
211 |
Q |
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| T |
51100863 |
cttatgctattaagattattgataagaacaagatcattgatctcaatatcacaaaccaggtttgtttcaaatgtcttttctctttctcattcgatcgtct |
51100764 |
T |
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| Q |
212 |
cctctgtttattcacatatattatggaaaaattcaaatgaaactttgtttataataatgtctggaatgagtatataagagagatgacacaaattatatct |
311 |
Q |
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| T |
51100763 |
cctctgtttattcacatatattatggaaaaattcaaatgaaactttgtt----------------atgagtatataagagagatgacacaaattatatct |
51100680 |
T |
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| Q |
312 |
taaagttttggtcaagatgtagtgtttttcaagaaatt |
349 |
Q |
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| T |
51100679 |
taaagttttggtcaagatgtagtgtttttcaagaaatt |
51100642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 51100582 - 51100525
Alignment:
| Q |
349 |
tattgaaaaattaattcaaatggtgtgtttgtgtgtataaaattcaaggatttggtta |
406 |
Q |
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| T |
51100582 |
tattgaaaaattaattcaaatggtgtgtttgtgtgtataaaattcaaggatttggtta |
51100525 |
T |
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