View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15791_low_9 (Length: 414)

Name: NF15791_low_9
Description: NF15791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15791_low_9
NF15791_low_9
[»] chr6 (17 HSPs)
chr6 (15-399)||(6724247-6724640)
chr6 (201-326)||(17533390-17533513)
chr6 (125-347)||(212003-212225)
chr6 (228-321)||(16109907-16110000)
chr6 (235-326)||(7495004-7495095)
chr6 (104-212)||(26545988-26546095)
chr6 (31-132)||(17533274-17533381)
chr6 (104-324)||(12311897-12312113)
chr6 (225-306)||(2988120-2988200)
chr6 (261-342)||(8485957-8486037)
chr6 (242-347)||(32340284-32340388)
chr6 (120-320)||(12283608-12283807)
chr6 (242-305)||(688087-688150)
chr6 (31-94)||(1929155-1929217)
chr6 (242-306)||(30928364-30928428)
chr6 (242-341)||(10229461-10229560)
chr6 (95-135)||(211943-211983)
[»] chr1 (28 HSPs)
chr1 (31-322)||(31183482-31183775)
chr1 (34-399)||(29488206-29488569)
chr1 (65-339)||(2136805-2137083)
chr1 (219-339)||(50709546-50709665)
chr1 (219-340)||(46594212-46594332)
chr1 (201-399)||(22791058-22791249)
chr1 (189-322)||(4073506-4073639)
chr1 (140-271)||(51273129-51273262)
chr1 (219-320)||(50461192-50461293)
chr1 (31-136)||(22790945-22791053)
chr1 (261-347)||(16122800-16122885)
chr1 (242-341)||(13558498-13558597)
chr1 (222-289)||(30193412-30193478)
chr1 (242-308)||(38682929-38682995)
chr1 (270-322)||(30902397-30902449)
chr1 (265-324)||(270965-271024)
chr1 (270-324)||(781883-781937)
chr1 (94-136)||(50709686-50709728)
chr1 (278-339)||(13643833-13643894)
chr1 (273-322)||(17936244-17936292)
chr1 (242-322)||(4973087-4973167)
chr1 (261-395)||(14286987-14287115)
chr1 (140-176)||(50461121-50461157)
chr1 (242-341)||(40693947-40694046)
chr1 (152-305)||(4966736-4966887)
chr1 (65-132)||(16123013-16123084)
chr1 (255-341)||(50726668-50726754)
chr1 (365-395)||(50727213-50727243)
[»] chr2 (29 HSPs)
chr2 (34-395)||(36925503-36925856)
chr2 (31-347)||(26352600-26352920)
chr2 (31-338)||(3353132-3353439)
chr2 (105-400)||(45388708-45388997)
chr2 (144-341)||(18858483-18858680)
chr2 (201-339)||(43355706-43355843)
chr2 (95-347)||(44986408-44986650)
chr2 (117-347)||(36525847-36526066)
chr2 (221-324)||(16496782-16496884)
chr2 (250-347)||(41323899-41323996)
chr2 (242-347)||(7017845-7017950)
chr2 (242-347)||(37272917-37273022)
chr2 (221-342)||(36467222-36467342)
chr2 (283-347)||(30776686-30776750)
chr2 (98-319)||(11457848-11458070)
chr2 (242-342)||(35298451-35298551)
chr2 (31-94)||(14749544-14749606)
chr2 (242-347)||(11562733-11562836)
chr2 (31-89)||(45389019-45389076)
chr2 (261-341)||(38221640-38221720)
chr2 (242-302)||(40498676-40498736)
chr2 (31-95)||(43344689-43344752)
chr2 (286-341)||(18561115-18561170)
chr2 (242-341)||(42794781-42794880)
chr2 (261-347)||(2788913-2788999)
chr2 (262-304)||(38140639-38140681)
chr2 (261-347)||(38558674-38558759)
chr2 (152-317)||(30485631-30485795)
chr2 (363-395)||(26352561-26352593)
[»] chr8 (24 HSPs)
chr8 (31-347)||(37231785-37232104)
chr8 (65-395)||(9136558-9136882)
chr8 (24-395)||(14180015-14180402)
chr8 (94-290)||(2813633-2813829)
chr8 (140-271)||(11558763-11558894)
chr8 (158-341)||(18928485-18928668)
chr8 (250-324)||(12006746-12006820)
chr8 (94-205)||(31431248-31431359)
chr8 (242-341)||(6166450-6166549)
chr8 (242-395)||(32855987-32856133)
chr8 (31-162)||(39297500-39297637)
chr8 (242-395)||(25429990-25430137)
chr8 (67-162)||(22470724-22470822)
chr8 (244-338)||(13003382-13003474)
chr8 (261-339)||(18320728-18320805)
chr8 (242-324)||(23877400-23877482)
chr8 (261-306)||(17748925-17748970)
chr8 (98-135)||(32579149-32579186)
chr8 (221-270)||(39297675-39297724)
chr8 (296-347)||(11558684-11558736)
chr8 (65-214)||(12006839-12006992)
chr8 (363-395)||(18320693-18320725)
chr8 (279-347)||(35536945-35537012)
chr8 (283-347)||(43101019-43101083)
[»] chr4 (20 HSPs)
chr4 (104-342)||(44746425-44746663)
chr4 (94-342)||(43770428-43770673)
chr4 (27-322)||(21619592-21619888)
chr4 (104-342)||(22198747-22198980)
chr4 (219-395)||(34075140-34075313)
chr4 (242-347)||(10037871-10037976)
chr4 (120-317)||(34733793-34733988)
chr4 (242-395)||(53586369-53586516)
chr4 (96-214)||(35823460-35823578)
chr4 (31-136)||(10632247-10632355)
chr4 (98-324)||(44987299-44987522)
chr4 (242-340)||(45774026-45774124)
chr4 (243-324)||(28102017-28102098)
chr4 (112-347)||(4775801-4776034)
chr4 (156-265)||(25204405-25204522)
chr4 (261-347)||(27675450-27675536)
chr4 (249-347)||(35823602-35823700)
chr4 (264-341)||(35103543-35103620)
chr4 (31-94)||(47724673-47724735)
chr4 (73-135)||(38947679-38947745)
[»] chr7 (27 HSPs)
chr7 (35-342)||(31396988-31397298)
chr7 (35-326)||(44797994-44798287)
chr7 (220-399)||(48138463-48138635)
chr7 (188-340)||(46192231-46192383)
chr7 (157-321)||(16817877-16818034)
chr7 (222-295)||(24699810-24699882)
chr7 (95-200)||(47277897-47278002)
chr7 (277-341)||(2483783-2483847)
chr7 (240-305)||(25482609-25482674)
chr7 (31-136)||(48138659-48138767)
chr7 (242-341)||(45648231-45648330)
chr7 (296-346)||(47277149-47277199)
chr7 (263-308)||(3094258-3094303)
chr7 (242-339)||(3751503-3751600)
chr7 (104-202)||(22201255-22201353)
chr7 (104-202)||(22236468-22236566)
chr7 (261-347)||(47843793-47843879)
chr7 (240-305)||(7857938-7858003)
chr7 (242-347)||(22201110-22201214)
chr7 (242-347)||(22236607-22236711)
chr7 (242-306)||(40836439-40836503)
chr7 (152-339)||(42040377-42040561)
chr7 (242-306)||(43495761-43495825)
chr7 (363-396)||(34471728-34471761)
chr7 (34-94)||(9229429-9229488)
chr7 (359-399)||(16817806-16817846)
chr7 (242-306)||(25311012-25311076)
[»] chr5 (24 HSPs)
chr5 (31-336)||(7732241-7732545)
chr5 (219-339)||(42990701-42990820)
chr5 (172-347)||(12118323-12118496)
chr5 (125-347)||(41634401-41634610)
chr5 (95-337)||(12848318-12848545)
chr5 (189-338)||(27972008-27972159)
chr5 (158-341)||(2627883-2628069)
chr5 (242-324)||(5836542-5836624)
chr5 (242-339)||(16756084-16756181)
chr5 (107-181)||(39329596-39329670)
chr5 (104-194)||(8802687-8802777)
chr5 (263-322)||(26016613-26016672)
chr5 (242-341)||(26564971-26565070)
chr5 (35-135)||(41634663-41634766)
chr5 (242-300)||(13407268-13407326)
chr5 (242-340)||(29231085-29231183)
chr5 (289-347)||(39329530-39329588)
chr5 (94-170)||(36906776-36906852)
chr5 (104-136)||(39700891-39700923)
chr5 (252-319)||(7612609-7612676)
chr5 (110-207)||(5836653-5836750)
chr5 (261-306)||(31114025-31114070)
chr5 (242-338)||(7057119-7057215)
chr5 (243-347)||(32076545-32076649)
[»] chr3 (31 HSPs)
chr3 (115-347)||(24611339-24611573)
chr3 (94-399)||(31489382-31489684)
chr3 (94-341)||(50387204-50387442)
chr3 (31-303)||(21842588-21842863)
chr3 (218-341)||(47014278-47014400)
chr3 (31-303)||(21858231-21858504)
chr3 (219-325)||(43471806-43471911)
chr3 (219-347)||(1341658-1341786)
chr3 (31-203)||(47014501-47014676)
chr3 (231-347)||(24121073-24121190)
chr3 (31-203)||(21853839-21854013)
chr3 (166-324)||(20619294-20619452)
chr3 (141-277)||(8913548-8913685)
chr3 (242-341)||(29324097-29324196)
chr3 (94-204)||(53530563-53530673)
chr3 (32-162)||(24121239-24121372)
chr3 (243-395)||(27164037-27164181)
chr3 (242-324)||(38489734-38489816)
chr3 (94-136)||(43471932-43471974)
chr3 (255-341)||(45472615-45472701)
chr3 (31-95)||(16343146-16343210)
chr3 (255-342)||(20369268-20369354)
chr3 (65-136)||(1341547-1341622)
chr3 (225-282)||(2111477-2111534)
chr3 (242-304)||(36504873-36504935)
chr3 (242-307)||(20179041-20179106)
chr3 (243-347)||(40614831-40614935)
chr3 (31-94)||(36172019-36172081)
chr3 (255-316)||(35296463-35296524)
chr3 (31-96)||(35433483-35433547)
chr3 (363-395)||(47014227-47014259)
[»] scaffold0001 (1 HSPs)
scaffold0001 (94-303)||(394216-394425)
[»] scaffold0051 (1 HSPs)
scaffold0051 (31-96)||(53789-53854)
[»] scaffold0565 (1 HSPs)
scaffold0565 (255-341)||(7919-8005)
[»] scaffold0495 (1 HSPs)
scaffold0495 (242-341)||(6176-6275)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 399
Target Start/End: Original strand, 6724247 - 6724640
Alignment:
Q  15 gcatcgatgaccctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaagttt---------ttata 105  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||   |         |||||    
T  6724247 gcatcgatgatcctttaatactatataatcataaaagccatcatttacagaaaaataatacatgcaatcaaaatataaaaaaaaataaaaaaaaattata 6724346  T
Q  106 taaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctc 205  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  6724347 taaattatattctattttcattcgtatgttatagtatcagcaaatgcatcaataaaagaactcaatacaaagtttgtttattatttattgattgaatctc 6724446  T
Q  206 ctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 305  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724447 ctatctctctttgctttcatccaccaaaaatataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 6724546  T
Q  306 ccattg-aattttcacaacacagcctcacttttttaccattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtatttgt 399  Q
    |||||| ||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  6724547 ccattgaaattttcacaacacagcctcacttttttaccattcattttttt-tccttccaggatacgtctatgtgaagtatcttataagtatttgt 6724640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 17533390 - 17533513
Alignment:
Q  201 atctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatata 300  Q
    ||||||| |||||| |  ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||    
T  17533390 atctcctctctctcattactttcatccaccaaaaacataatttttaattggtt-atcgaaaaacaattacagtgattcatatcttaaatt-aatcatata 17533487  T
Q  301 catctccattgaattttcacaacaca 326  Q
    ||||||||||||||||||||||||||    
T  17533488 catctccattgaattttcacaacaca 17533513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 125 - 347
Target Start/End: Original strand, 212003 - 212225
Alignment:
Q  125 attcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttca 224  Q
    |||||| ||||| | ||||||||||  |||||||||||||||| || |||||||||||||| | |||||||||||||| |  | |||||  |    ||||    
T  212003 attcatctgttagaatatcaacaaacacatcaataaaagaactaaaaacaaagtttgtttaatgttgattgattgaatatgttgtctctagttatcttca 212102  T
Q  225 tccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
    |||| | |||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||| |||  |||| ||||| ||| ||| ||||||  |    
T  212103 tccatcgaaaacataatttttaattagttaatctaaaaacaattatattaattcatatcttaaattaaattgtatagatctctattaaatcttcacagta 212202  T
Q  325 cagcctcacttttttaccattca 347  Q
    |||  ||||||||||||| ||||    
T  212203 cagtttcacttttttacccttca 212225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 16110000 - 16109907
Alignment:
Q  228 accaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcaca 321  Q
    |||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  16110000 accaaaaacataatttttaattggttaatcaaaaaataattaaactaattcatatcttatattgaatcttatacatctccattgaattttcaca 16109907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 7495004 - 7495095
Alignment:
Q  235 acataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacaca 326  Q
    |||||||||||||| ||||||   ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7495004 acataatttttaataggttaaataaaaaacaattatagtgattcatatcttaaattgaatcatgtacatctccattgaattttcacaacaca 7495095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 26545988 - 26546095
Alignment:
Q  104 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 203  Q
    ||||||||||||| | |||||| ||||||||||   |||||||| |  ||||| ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  26545988 tataaatcatattatgttttcaatcatatgttaggatatcaacagaaacatca-taaaagaactcaagacaaattttgtttaaaattgattgattgaatc 26546086  T
Q  204 tcctatctc 212  Q
    |||| ||||    
T  26546087 tcctttctc 26546095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 17533274 - 17533381
Alignment:
Q  31 aatactatataattataaaagtcatcatttac--agaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttc 124  Q
    ||||||||||| | ||||||||||  |||||   | |||||||||||||| |||||||||| ||||    |||||||  |||||||||||||||||||||    
T  17533274 aatactatatattcataaaagtcacaatttaataaaaaaaataatacatgtgatcaaaataaaaaatataaagttttcgtataaatcatattctattttc 17533373  T
Q  125 attcatat 132  Q
    ||||||||    
T  17533374 attcatat 17533381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 324
Target Start/End: Original strand, 12311897 - 12312113
Alignment:
Q  104 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 203  Q
    ||||||||||||| ||||| ||||||||||||    |||||| | | ||||||  |||||||||||| ||||  |||||||| | |||||| |||||||     
T  12311897 tataaatcatattttatttccattcatatgttgggatatcaatagaagcatcatcaaaagaactcaacacaagttttgtttaatgttgattaattgaata 12311996  T
Q  204 tcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 303  Q
    |||| |||||| |    |||||||||   ||  |||| ||| || ||||| ||||| |||||||| || |||| ||||||| |||||||||  |||||||    
T  12311997 tcctctctctcgttaacttcatccac---aactataa-tttaaagtggttgatcgagaaacaattctattgatgcatatctaaaattgaattgtatacat 12312092  T
Q  304 ctccattgaattttcacaaca 324  Q
     |||| | | |||||||||||    
T  12312093 ttccacttatttttcacaaca 12312113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 2988120 - 2988200
Alignment:
Q  225 tccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 306  Q
    ||||| ||||| |||||||| || ||||| ||||| |||||||| || |||| ||||||| |||||||||||||||||||||    
T  2988120 tccacaaaaaatataatttt-aagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatctc 2988200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 8486037 - 8485957
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 342  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||| || |||| |||||||||||   |||| |||||||||    
T  8486037 aaacaattctactgatgcatatctaaaattgaatcatatacatctacactgaa-tttcacaacactatctcaattttttacc 8485957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 32340284 - 32340388
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| |||||||||||||| || |||| ||||| | ||||||||| ||||||||||  | |||||||| ||||||  | |||||||||||||    
T  32340284 ttttaaatggttcatcgaaaaacaattctattgatgcatatatgaaattgaattatatacatctttactgaatttt-acaacattgtctcacttttttac 32340382  T
Q  342 cattca 347  Q
    | ||||    
T  32340383 ccttca 32340388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 320
Target Start/End: Original strand, 12283608 - 12283807
Alignment:
Q  120 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgc 219  Q
    ||||||||||||||||    |||||| | | |||||| |||||||| |||| ||||| |||| ||| | |||||| |||||||||||| |||||| |       
T  12283608 ttttcattcatatgttgggatatcaatagaagcatcattaaaagaattcaacacaaattttgattaatgttgattaattgaatctcctctctctcgttaa 12283707  T
Q  220 tttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttca 319  Q
     ||||||||| ||||  |||| ||| || ||||| ||| | |||||||| ||||||| ||||||| | | |||||  |||||||  ||| ||||||||||    
T  12283708 cttcatccacaaaaagtataa-tttaaagtggttcatccagaaacaattctactgatgcatatctaatactgaattgtatacattcccactgaattttca 12283806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 688087 - 688150
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 305  Q
    |||||| ||||| ||||| ||||||||||| |||| ||||||| ||||||||| ||||||||||    
T  688087 ttttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaataatatacatct 688150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 1929217 - 1929155
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 94  Q
    |||||||||||||||||||||||   ||||||| ||||||||||||||  ||||||||||||||    
T  1929217 aatactatataattataaaagtcgcaatttaca-aaaaataatacatgtaatcaaaatataaaa 1929155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 30928428 - 30928364
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 306  Q
    |||||| ||||| ||| | |||||||||||||| | ||||| | |||||||||||||||||||||    
T  30928428 ttttaagtggttcatcaagaaacaattatactggtgcatatataaaattgaatcatatacatctc 30928364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 10229560 - 10229461
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||| |||||||||| || | || |||||||  |||||||||||||||||||| || |||| ||  |||||  | |||||||||||||    
T  10229560 ttttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcacttttttac 10229461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 211943 - 211983
Alignment:
Q  95 aagtttttatataaatcatattctattttcattcatatgtt 135  Q
    |||||||  ||||||||||||| ||||||||||||||||||    
T  211943 aagttttcgtataaatcatattttattttcattcatatgtt 211983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 31183775 - 31183482
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 126  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||  ||||||||| ||||    ||||||| |||||||||||||||||||||| |    
T  31183775 aatactatataatcataaaagtcaccatttaca-aaaaataatacatgtaatcaaaataaaaaatgtaaagttttcatataaatcatattctattttctt 31183677  T
Q  127 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatc 226  Q
    ||||||||||   |||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||| |||| |||||  |  ||||||||    
T  31183676 tcatatgttaggatatcaacaaatgtatcaatagaagaactcaaaacaaagtttgtttaatattgattgattgaatttcctctctcttgttactttcatc 31183577  T
Q  227 caccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaa 322  Q
     ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  31183576 -accaaaaacataatttttaattggttaatcgaaaagcaattatagtgattcatatctcaaattgaattatatacatatccattgaattttcacaa 31183482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 34 - 399
Target Start/End: Complemental strand, 29488569 - 29488206
Alignment:
Q  34 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattca 129  Q
    |||||| ||| ||||||||||  ||||| | ||||||||| |||| |||||||||| ||||    |||||||  ||||||||||||| ||||||||||||    
T  29488569 actataaaatgataaaagtcacgatttaga-aaaaataatgcatgtgatcaaaataaaaaatataaagttttcgtataaatcatattttattttcattca 29488471  T
Q  130 tatgttatagtatcaacaaatgcatcaat--aaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatcc 227  Q
    |||||||   |||||||||||||||||||  |||||||||||| |||||||||||||| | ||||||||||||||||||  || ||| |  |||||||||    
T  29488470 tatgttaagatatcaacaaatgcatcaattaaaaagaactcaaaacaaagtttgtttaatgttgattgattgaatctccactcactcgttactttcatcc 29488371  T
Q  228 accaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacag 327  Q
     | ||||||||||||||||||||||||||| ||| ||||||| | |||| ||||||||||| | ||||||||||||||||| | ||||||||||||| ||    
T  29488370 tctaaaaacataatttttaattggttaatcaaaatacaattacaatgatacatatcttaaacttaatcatatacatctccactaaattttcacaacaaag 29488271  T
Q  328 cctcacttttttaccattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtatttgt 399  Q
     ||||||||||  || ||||        || ||||||||||||| |  ||||||||||||||||||||||||    
T  29488270 tctcactttttcccccttcat-------tttttccaggatacgtatcagtgaagtatcttataagtatttgt 29488206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 65 - 339
Target Start/End: Complemental strand, 2137083 - 2136805
Alignment:
Q  65 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 160  Q
    |||||||||||||| |||||||| | ||||    |||||||  || ||||||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  2137083 aaaaataatacatgtgatcaaaacaaaaaatctaaagttttcgtagaaatcatattctattttcattcatatgttaggatatcaacaaatgcattaataa 2136984  T
Q  161 aagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaa 260  Q
    ||||| |||| ||||||||| |||| | |||||||||||||| ||   | | || |  ||||| || | ||||||||||||||||||||||||||||| |    
T  2136983 aagaattcaaaacaaagtttatttaatgttgattgattgaatatctcctatttcgttactttcgtcaatcaaaaacataatttttaattggttaatcgta 2136884  T
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 339  Q
    |||||||| |  |||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||  |||||||||||    
T  2136883 aaacaattgtggtgattcatatattaaattgaattatatatacttccattgaattttcacaacacatactcactttttt 2136805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 50709665 - 50709546
Alignment:
Q  219 ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttc 318  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50709665 ctttcatccaccaaaaacataatttttaattggtta-tcgaaaaacaattataatgattcatatcttaaattgaatcatatacatctccattgaattttc 50709567  T
Q  319 acaacacagcctcactttttt 339  Q
    ||||||| | |||| ||||||    
T  50709566 acaacactgtctcattttttt 50709546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 46594212 - 46594332
Alignment:
Q  219 ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttc 318  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46594212 ctttcatccaccaaaaacataatttttaattggtca-tcgaaaaacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttc 46594310  T
Q  319 acaacacagcctcactttttta 340  Q
    |||||| || |||| |||||||    
T  46594311 acaacatagtctcattttttta 46594332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 201 - 399
Target Start/End: Original strand, 22791058 - 22791249
Alignment:
Q  201 atctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatata 300  Q
    ||||||| |||||| |  |||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||    
T  22791058 atctcctctctctcgttactttcatccaccaaaaacataatttttaattggtta-tcgaaaa-caattgtagtgattcatatcttaaattgaatcatata 22791155  T
Q  301 catctccattgaattttcacaacacagcctca-cttttttaccattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtatttgt 399  Q
    ||| ||||||||||||||||||||||| ||||  ||||||||  ||||        || ||||||||||||||| ||||||||| |||||||||||||||    
T  22791156 catatccattgaattttcacaacacagtctcattttttttacacttcatt------tttttccaggatacgtctttgtgaagtaacttataagtatttgt 22791249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 189 - 322
Target Start/End: Original strand, 4073506 - 4073639
Alignment:
Q  189 ttgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttt-taattggttaatcgaaaaacaattatactgattcatatcttaa 287  Q
    ||||||||||||||||||  ||||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  4073506 ttgattgattgaatctccc-tctctcgctactttcatccaccaaaaacataattttttaattggttaatcgaaaaacaattatagtgattcatatcttaa 4073604  T
Q  288 attgaatcatatacatctccattgaattttcacaa 322  Q
    ||||||||||| ||||| |||||||||||||||||    
T  4073605 attgaatcatacacatcgccattgaattttcacaa 4073639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 51273262 - 51273129
Alignment:
Q  140 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctct--tcgctttcatccaccaaaaaca 237  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||||||  | ||||||||| | ||||||||    
T  51273262 tatcaacaactgcatcaataaaagaactcaaaacaaaatttgtttaatattgattgattgaatctcctctctctctcattgctttcatctatcaaaaaca 51273163  T
Q  238 taatttttaattggttaatcgaaaaacaattata 271  Q
    |||||||||||| || |||||||||| |||||||    
T  51273162 taatttttaattagtcaatcgaaaaataattata 51273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 50461192 - 50461293
Alignment:
Q  219 ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttc 318  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||||    
T  50461192 ctttcatccacaaaaaacataatttttatttggttaatcgaaaaacaattatatcgattcatatcttaaattgaaccatatacatctctattgaattttc 50461291  T
Q  319 ac 320  Q
    ||    
T  50461292 ac 50461293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 22790945 - 22791053
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 126  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||||| ||||    |||||||  ||||||||||||| |||||||||    
T  22790945 aatactatataatcataaaagtcacaatttaca-aaaaataatacatgtgatcaaaataaaaaacttaaagttttcgtataaatcatattttattttcat 22791043  T
Q  127 tcatatgtta 136  Q
    ||||||||||    
T  22791044 tcatatgtta 22791053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 16122885 - 16122800
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||| |||| ||||||||||  | |||||||||||||| ||||    
T  16122885 aaacaattatactgatgcatatctaaaattgaatcatatacatttccaatgaa-tttcacaacattgtctcacttttttacccttca 16122800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 13558597 - 13558498
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| ||||||||||||||||||| | ||||||| || ||||||  | |||||||||||||    
T  13558597 ttttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaacattgtctcacttttttac 13558498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 30193478 - 30193412
Alignment:
Q  222 tcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaat 289  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| || ||||||    
T  30193478 tcatccaccaaaaacataatttttaattggtt-atcgaaaaacaattatagcgattcaaattttaaat 30193412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 38682929 - 38682995
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctcca 308  Q
    |||||| ||||||||||| |||||||| || |||| ||||||| |||||||||||||||||||||||    
T  38682929 ttttaagtggttaatcgagaaacaattctattgatgcatatctaaaattgaatcatatacatctcca 38682995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 30902397 - 30902449
Alignment:
Q  270 tactgattcatatcttaaattgaatcatatacatctccattgaattttcacaa 322  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  30902397 tactgatgcatatttaaaattgaatcatatacatctccattgaattttcacaa 30902449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 271024 - 270965
Alignment:
Q  265 aattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
    ||||||||||||  |||||| ||||||||||||||| |||||||| ||||||||||||||    
T  271024 aattatactgatgtatatctaaaattgaatcatatatatctccatcgaattttcacaaca 270965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 781937 - 781883
Alignment:
Q  270 tactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
    ||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  781937 tactgtttcatatctaaaattgaatcatatacatattcattgaattttcacaaca 781883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 50709728 - 50709686
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgtta 136  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  50709728 aaagttttcatataaatcatattctattttcattcatatgtta 50709686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 13643894 - 13643833
Alignment:
Q  278 catatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||   | |||||||||||    
T  13643894 catatctaaaattgaatcatatacatctctattgaatttttacaacgttgtctcactttttt 13643833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 17936244 - 17936292
Alignment:
Q  273 tgattcatatcttaaattgaatcatatacatctccattgaattttcacaa 322  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  17936244 tgattcatatcatatattga-tcatatacatctccattgaattttcacaa 17936292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 4973087 - 4973167
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaa 322  Q
    |||||| | ||| ||||| |||||||| ||| |||  |||||| ||||||||||||||| ||||||| |||||||| ||||    
T  4973087 ttttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctccactgaatttttacaa 4973167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 395
Target Start/End: Complemental strand, 14287115 - 14286987
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcannnnnnncttctt 360  Q
    |||||||| |||| || ||||||| |||||| ||||||||||||||   |||||||| ||||||  | ||||||||||| || ||||       ||| ||    
T  14287115 aaacaattctactaatgcatatctaaaattgcatcatatacatctctcctgaatttttacaacattgtctcactttttttcccttca------tcttttt 14287022  T
Q  361 ccaggatacgtctatgtgaagtatcttataagtat 395  Q
    | ||||||| | |||| ||||||||||||||||||    
T  14287021 ctaggatacatatatgcgaagtatcttataagtat 14286987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 50461121 - 50461157
Alignment:
Q  140 tatcaacaaatgcatcaataaaagaactcaatacaaa 176  Q
    ||||||||||||||||||||||||||||||| |||||    
T  50461121 tatcaacaaatgcatcaataaaagaactcaaaacaaa 50461157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 40694046 - 40693947
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| || || |||||||||||||| || |||| ||||||| | ||||| |||||||||||   | |||||||| ||||||  | |||||||||||||    
T  40694046 ttttaagtgtttcatcgaaaaacaattctattgatgcatatctaatattgagtcatatacatcaataatgaatttttacaacattgtctcacttttttac 40693947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 4966887 - 4966736
Alignment:
Q  152 catcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattgg 251  Q
    ||||| ||||||||||||| ||||| ||| |||| | |||||| | ||||||  || |||||| |  ||||||||||| | ||  |||  |||||| | |    
T  4966887 catcattaaaagaactcaacacaaattttatttaatgttgattaactgaatcatctctctctcgttactttcatccacaagaagtata--ttttaagttg 4966790  T
Q  252 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 305  Q
    || ||||| |||||||| ||| |||  |||||| ||||||||||||||| ||||    
T  4966789 ttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatct 4966736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 16123084 - 16123013
Alignment:
Q  65 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatat 132  Q
    ||||||||||||| ||||||||||| ||||    |||||||  |||||| |||||| |||||||||||||||    
T  16123084 aaaaataatacattcgatcaaaataaaaaatgtaaagttttcttataaaccatattatattttcattcatat 16123013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 50726754 - 50726668
Alignment:
Q  255 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    ||||| |||||||| || |||  ||||||| ||||||| ||||||||||||  | |||||||| ||||||  | |||||||||||||    
T  50726754 atcgagaaacaattctattgacgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttac 50726668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 395
Target Start/End: Complemental strand, 50727243 - 50727213
Alignment:
Q  365 gatacgtctatgtgaagtatcttataagtat 395  Q
    |||||||||||||||||||||||||||||||    
T  50727243 gatacgtctatgtgaagtatcttataagtat 50727213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 34 - 395
Target Start/End: Complemental strand, 36925856 - 36925503
Alignment:
Q  34 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa---aaagtttttatataaatcatattctattttcattcat 130  Q
    |||||||||  ||||||||||  ||||||| |||||||||||||| |||||||||| |||   ||||||||  || |||||||||||||||||||||||     
T  36925856 actatataaccataaaagtcacaatttaca-aaaaataatacatgtgatcaaaataaaaatgtaaagttttcgtaaaaatcatattctattttcattcac 36925758  T
Q  131 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccacc 230  Q
    |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| ||||||| |||||||||| |||    
T  36925757 atgttaga-tatcaacaaatacatcaataaaagaactcaaaacaaagtttgtttaatgttgattgattgaatctcctctctctct-cgctttcatctacc 36925660  T
Q  231 aaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcct 330  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||    |||||| ||||||||  ||    
T  36925659 aaaaacataatttttaattggttaatcgaaaaacaattatagtcattcatatcttaaattgactcatatacatctcc----aatttttacaacacaatct 36925564  T
Q  331 cacttttttaccattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtat 395  Q
    ||  |||||||| ||||        ||| ||||||||||||||   |||||||||||||||||||    
T  36925563 catgtttttacccttcattta----ttcctccaggatacgtctcaatgaagtatcttataagtat 36925503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 31 - 347
Target Start/End: Complemental strand, 26352920 - 26352600
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 126  Q
    ||||||||| ||| ||||||||||| ||||||| |||||||||||| |||||||||||| ||||    |||||||  ||||||||||||| |||||||||    
T  26352920 aatactataaaatcataaaagtcataatttaca-aaaaataatacaagcgatcaaaataaaaaatgtaaagttttcgtataaatcatattttattttcat 26352822  T
Q  127 tcata-tgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcat 225  Q
    ||||| |||||   |||||||||||  |||  ||||||||||||| || | |||| |||| | ||||||||||||||||||  ||| || |  |||||||    
T  26352821 tcataatgttaggatatcaacaaatttatcggtaaaagaactcaaaactacgtttatttaatgttgattgattgaatctcccctctttcattactttcat 26352722  T
Q  226 ccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacac 325  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  26352721 ccaccaaaaacataatttttaattggttaatcgagaaacaattatagtgactcatatcttaaattgaatcatacacatctccattgaattttcacaaaac 26352622  T
Q  326 agcctcacttttttaccattca 347  Q
    || |||||||||||||| ||||    
T  26352621 agactcacttttttacctttca 26352600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 31 - 338
Target Start/End: Complemental strand, 3353439 - 3353132
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa---aagtttttatataaatcatattctattttcatt 127  Q
    ||||||||||||| |||||||||   ||||||| |||||||| |||||  ||||||||| ||     |||||||  |||||||||||| | |||||||||    
T  3353439 aatactatataatcataaaagtcccaatttaca-aaaaataacacatg--atcaaaataaaattgtgaagttttcgtataaatcatatccaattttcatt 3353343  T
Q  128 catatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatcc 227  Q
    |||||||||   |||||||||||| || ||||||||||||||| |||||||||||||| | ||||||||| ||||||| | || ||| |  ||||||||     
T  3353342 catatgttaggatatcaacaaatgtatgaataaaagaactcaaaacaaagtttgtttaatgttgattgatcgaatctcttctccctcgttactttcatct 3353243  T
Q  228 accaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacag 327  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  3353242 accaaaaacataatttttaactggttaatcgaaaaacaattataatgattcatatcttaaattgaatcatatacatttccattaaattttcacaacatag 3353143  T
Q  328 cctcacttttt 338  Q
     ||||||||||    
T  3353142 tctcacttttt 3353132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 105 - 400
Target Start/End: Complemental strand, 45388997 - 45388708
Alignment:
Q  105 ataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatct 204  Q
    |||||||||||| |||||||||||||||||||   ||| |||||||||||||||||||||||| || ||||||| |||||| | ||||||||||||||||    
T  45388997 ataaatcatattatattttcattcatatgttaggatattaacaaatgcatcaataaaagaacttaaaacaaagtatgtttaatgttgattgattgaatct 45388898  T
Q  205 cctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatc 304  Q
    | | |||||| |  ||||||| || |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||| ||  |||    
T  45388897 catctctctcgttactttcattcaacaaaaacataatttttaattagttaatcgaaaaataattatagtgatttatatcttaaattgaatcaaattaatc 45388798  T
Q  305 tccattgaattttcacaacacagcctca-cttttttaccattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtatttgtt 400  Q
    ||||||||||||||||||||||| ||||  ||||||||| ||||        || || ||||||| |||| || |||||||||||||||||||||||    
T  45388797 tccattgaattttcacaacacagtctcattttttttacccttcat-------ttttttcaggatatgtctttgcgaagtatcttataagtatttgtt 45388708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 144 - 341
Target Start/End: Complemental strand, 18858680 - 18858483
Alignment:
Q  144 aacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataattt 243  Q
    |||||||||||||||||||||| | || |||||||||||||| |  |||||||||||||||| | |||||| |  |||||||| |||||||||||||||     
T  18858680 aacaaatgcatcaataaaagaatttaaaacaaagtttgtttaatgctgattgattgaatctcttctctctcgttactttcatctaccaaaaacataatta 18858581  T
Q  244 ttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||| |||| ||||   ||||||||||||    
T  18858580 ttaattggttaatcgaaaaacaattatattcattcatatcataaattgaatcatatacatcttcattgaatttacacatcacatattcacttttttac 18858483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 43355706 - 43355843
Alignment:
Q  201 atctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatata 300  Q
    ||||||| |||||| |  ||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||||||| ||||||||||||    
T  43355706 atctcctctctctcattactttcatccaccaaaaacataatttttaattcgtta-tagaaaaacaattatagtgattcatatcttaacttgaatcatata 43355804  T
Q  301 catctccattgaattttcacaacacagcctcactttttt 339  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  43355805 catctccattgaattttcacaacacagtctcattttttt 43355843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 95 - 347
Target Start/End: Complemental strand, 44986650 - 44986408
Alignment:
Q  95 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 194  Q
    |||||||  ||||||||||||| |||||||| | |||| |||   ||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||    
T  44986650 aagttttagtataaatcatattatattttcacttatatattaagatatcaacaaatgcatcaataaaagaacccaaaacaaagtttgtttaatgttgatt 44986551  T
Q  195 gattgaatctcctatctc-tcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaa 293  Q
    ||||||||||||| |||| || ||   || |||||  |||||||||||||| | |||||||||||||||||||||||| || |||||      |||||||    
T  44986550 gattgaatctcctttctcgtcatc---tttatccaagaaaaacataattttcagttggttaatcgaaaaacaattatattgtttcat------aattgaa 44986460  T
Q  294 tcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    |||||||||  |||||||||||||||||| |||| ||||  |||||| ||||||    
T  44986459 tcatataca--tccattgaattttcacaatacagtctcaactttttatcattca 44986408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 117 - 347
Target Start/End: Original strand, 36525847 - 36526066
Alignment:
Q  117 ctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctc--tc 214  Q
    |||||||||||||||| |||     ||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||  ||| ||||  ||    
T  36525847 ctattttcattcatatattaggacgtcaacaaatgcatcaataaaaaaactcaaaacaaaatttgtttaatattgattgattgaattacctgtctctgtc 36525946  T
Q  215 ttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaat 314  Q
     |  || ||||||| |||||||||||||| |||||| |||||||||||||| ||||| ||             |||||||||| ||||||||||||||||    
T  36525947 gttactctcatccaacaaaaacataatttgtaattgattaatcgaaaaacagttatattg-------------attgaatcatgtacatctccattgaat 36526033  T
Q  315 tttcacaacacagcctcacttttttaccattca 347  Q
    | ||||||||||  |||||||||||||| ||||    
T  36526034 tctcacaacacaatctcacttttttacccttca 36526066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 324
Target Start/End: Original strand, 16496782 - 16496884
Alignment:
Q  221 ttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcac 320  Q
    ||||||||| ||||| ||| |||| || ||||| ||||| |||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  16496782 ttcatccacaaaaaatatactttt-aagtggttcatcgagaaacaattttactgattcacatctaaaattgaatcatatacatcttcattgaattttcac 16496880  T
Q  321 aaca 324  Q
    ||||    
T  16496881 aaca 16496884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 41323996 - 41323899
Alignment:
Q  250 ggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    |||| ||||| |||||||| ||||||| ||||||| ||||||||||||||||||||| | |||||||| ||||||  | |||||||||||||| ||||    
T  41323996 ggttcatcgagaaacaattttactgatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcacttttttaccgttca 41323899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 347
Target Start/End: Complemental strand, 7017950 - 7017845
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| |||||||| |||  || ||||||| ||||||||||||||||||||| | |||||||| ||||||  | |||||||||||||    
T  7017950 ttttaagtggtttatcgagaaacaattctacccatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcacttttttac 7017851  T
Q  342 cattca 347  Q
    | ||||    
T  7017850 ccttca 7017845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 37272917 - 37273022
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| |||||||||||||| || |||| ||| ||| ||||||||||||||||||||| | |||||||| ||||||  | || ||||||||||    
T  37272917 ttttaagtggttcatcgaaaaacaattttattgatgcatgtctaaaattgaatcatatacatctctactgaatttttacaacattgtcttacttttttac 37273016  T
Q  342 cattca 347  Q
    | ||||    
T  37273017 ctttca 37273022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 342
Target Start/End: Complemental strand, 36467342 - 36467222
Alignment:
Q  221 ttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcac 320  Q
    ||||||||| | || ||||||||| || ||||| ||||| |||||||| |||| || ||||||| |||||||||||||||||| || | |||||||| ||    
T  36467342 ttcatccacaagaatcataatttt-aagtggttcatcgagaaacaattttacttatgcatatctaaaattgaatcatatacatttcaactgaatttttac 36467244  T
Q  321 aacacagcctcacttttttacc 342  Q
    ||||  | |||||||| |||||    
T  36467243 aacattgtctcactttcttacc 36467222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 30776750 - 30776686
Alignment:
Q  283 cttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    ||||| |||||||||||||||||| |||||||||| | ||||||| |||||||||||||| ||||    
T  30776750 cttaatttgaatcatatacatctcgattgaatttttataacacagtctcacttttttacccttca 30776686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 319
Target Start/End: Complemental strand, 11458070 - 11457848
Alignment:
Q  98 tttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgat 197  Q
    |||| |||||||| ||||| ||||||||||||||| ||||  |||||||| | |||||| ||||| ||| ||| ||||| ||||| || | |||||| ||    
T  11458070 ttttcatataaataatattatattttcattcatatattatgatatcaacataagcatcattaaaataacgcaacacaaattttgtctaatgttgattaat 11457971  T
Q  198 tgaatctcctatctctcttcgctttcatccaccaaa--aacat-aatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaat 294  Q
    | |||||  | |||||| |  | ||||||||| |||  || || ||  ||||| ||||| ||| ||||| |||||||||  || | |||| || ||||||    
T  11457970 taaatct--tctctctcattaccttcatccacaaaaataaaataaaaatttaagtggttcatccaaaaataattatactattttagatctaaagttgaat 11457873  T
Q  295 catatacatctccattgaattttca 319  Q
    ||||||||  |||||||||||||||    
T  11457872 catatacacttccattgaattttca 11457848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 35298551 - 35298451
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| ||| |||| || |||| ||| ||| ||||||||| ||||||||||| | |||||||| ||||||  | |||||||||||||    
T  35298551 ttttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctactgaatttttacaacattgtctcacttttttac 35298452  T
Q  342 c 342  Q
    |    
T  35298451 c 35298451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 14749606 - 14749544
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 94  Q
    ||||||||||||| ||||||||| | ||||||| |||||||||||||| |||||||||| ||||    
T  14749606 aatactatataatcataaaagtcgtgatttaca-aaaaataatacatgtgatcaaaataaaaaa 14749544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 11562733 - 11562836
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| |||||||| |  |||||||||||  ||||||||||||||| ||||| | |||||||  ||||||  | |||||||||||||    
T  11562733 ttttaagtggtttatcgagaaacaattgt--tgattcatatccaaaattgaatcatatatatctctactgaatttctacaacattgtctcacttttttac 11562830  T
Q  342 cattca 347  Q
    | ||||    
T  11562831 ccttca 11562836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 45389076 - 45389019
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaata 89  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||||||    
T  45389076 aatactatataatcataaaagtcacaatttaca-aaaaataatacatgtgatcaaaata 45389019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 38221640 - 38221720
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||||| || |||| ||||||  ||||||||||||||||||||| ||||||| || ||||||  | |||||| ||||||    
T  38221640 aaacaattctagtgatgcatatccaaaattgaatcatatacatctctattgaatgtttacaacattgtctcactcttttac 38221720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 40498736 - 40498676
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatataca 302  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| |||||||||||||||||    
T  40498736 ttttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatataca 40498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 43344689 - 43344752
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaa 95  Q
    ||||||||||||| ||||||||||  ||| ||| |||||||||||||| |||||||||| |||||    
T  43344689 aatactatataatcataaaagtcacaattcaca-aaaaataatacatgtgatcaaaataaaaaaa 43344752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 18561170 - 18561115
Alignment:
Q  286 aaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||||||||||||||| |||| |||||||||| ||||  | |||||||||||||    
T  18561170 aaattgaatcatatacatttccactgaattttcaaaacattgtctcacttttttac 18561115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 42794781 - 42794880
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| || || ||||| |||||||| || |||| ||||||| ||||||| ||| ||||||||  | |||||||| ||||||  | |||||||||||||    
T  42794781 ttttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcacatacatctataatgaatttttacaacattgtctcacttttttac 42794880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 2788999 - 2788913
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    |||||||| |||| || ||||| | ||||||||| |||||||| |||||| || |||||||| |  | |||||||||||| ||||||    
T  2788999 aaacaattttactaatgcatatttaaaattgaatgatatacatttccattaaactttcacaatattgtctcacttttttaacattca 2788913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 38140681 - 38140639
Alignment:
Q  262 aacaattatactgattcatatcttaaattgaatcatatacatc 304  Q
    |||||||||| |||| ||||||| |||||||||||||||||||    
T  38140681 aacaattatattgatgcatatctaaaattgaatcatatacatc 38140639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 38558674 - 38558759
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    ||||||||||||||||  |||||| ||||||||||  ||| |||| || | |||||||||||| | | |||||||||||||| ||||    
T  38558674 aaacaattatactgatatatatctaaaattgaatc-gatatatcttcaataaattttcacaactctgtctcacttttttacctttca 38558759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 317
Target Start/End: Complemental strand, 30485795 - 30485631
Alignment:
Q  152 catcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattgg 251  Q
    ||||| ||||||||||||| ||||| ||| | || | |||||| |||||||| ||| |||||| |  | ||||||||| | ||  ||||  ||||| |||    
T  30485795 catcattaaaagaactcaacacaaactttatctaatgttgattaattgaatcacctttctctcattaccttcatccacaagaagtataa-atttaagtgg 30485697  T
Q  252 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaatttt 317  Q
    || | ||| |||||||| || |||| ||||||| |||||||| || | ||||||| | ||||||||    
T  30485696 ttcaccgagaaacaattctaatgatgcatatctaaaattgaaccacacacatctctactgaatttt 30485631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 26352593 - 26352561
Alignment:
Q  363 aggatacgtctatgtgaagtatcttataagtat 395  Q
    ||||||||| |||||||||||||||||||||||    
T  26352593 aggatacgtttatgtgaagtatcttataagtat 26352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 31 - 347
Target Start/End: Complemental strand, 37232104 - 37231785
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 126  Q
    ||||||||||||  ||||||||||  ||||||| |||||||||| ||| ||||||| || ||||    || ||||  |||||||||||||||||||||||    
T  37232104 aatactatataagcataaaagtcacaatttaca-aaaaataatatatgtgatcaaagtaaaaaatgtaaatttttcgtataaatcatattctattttcat 37232006  T
Q  127 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatc 226  Q
    | ||||||||   ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||| ||| |||| |||||| |  ||||||||    
T  37232005 ttatatgttaggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattaatttaatttcctttctctcgttactttcatc 37231906  T
Q  227 caccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacaca 326  Q
     |||||||||||||||||||||||||||||||||||| | |||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37231905 aaccaaaaacataatttttaattggttaatcgaaaaatatttactgtgattcatatcttaaattgaatcgtatacatctccattgaattttcacaacaca 37231806  T
Q  327 gcctcacttttttaccattca 347  Q
      |||||||||||||| ||||    
T  37231805 atctcacttttttacccttca 37231785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 65 - 395
Target Start/End: Original strand, 9136558 - 9136882
Alignment:
Q  65 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 160  Q
    ||||| |||||||| |||||||||| ||||    || ||||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  9136558 aaaaaaaatacatgtgatcaaaataaaaaatgtaaaattttcgtataaatcatattctattttcattcatatgttatgatatcaacaaatgcatcaataa 9136657  T
Q  161 aagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaa 260  Q
     |||| |||| | ||| ||| |||| | || ||| |||||||||| | |||||| |  ||||||||||| |||  ||||||||| |||||||||||||||    
T  9136658 gagaattcaaaataaaatttatttattgttaatttattgaatctcatctctctcgttactttcatccactaaa--cataatttt-aattggttaatcgaa 9136754  T
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcannnnnnncttctt 360  Q
    ||||||||||| |||||| ||| |||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||| ||||        || ||    
T  9136755 aaacaattatagtgattcttattttaaattgaatcatatatgtctccattgaattttcacaacacaatctcacttttttacccttcat-------ttttt 9136847  T
Q  361 ccaggatacgtctatgtgaagtatcttataagtat 395  Q
    ||||||||||||| |||||||||| ||||||||||    
T  9136848 ccaggatacgtctctgtgaagtatgttataagtat 9136882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 395
Target Start/End: Complemental strand, 14180402 - 14180015
Alignment:
Q  24 accctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattcta 119  Q
    |||||| |||||||| |||| ||||||||||  ||||||| ||||||||| |||| |||||||||| || |    || ||||  ||||||||||||||||    
T  14180402 acccttcaatactatttaatcataaaagtcacaatttaca-aaaaataatgcatgtgatcaaaataaaatatgtaaatttttcgtataaatcatattcta 14180304  T
Q  120 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgc 219  Q
    |||||||||||| ||||   ||||||||||||||||||||||||||||||  |||||||||||||| | |||||||||||||| || | |||||| |  |    
T  14180303 ttttcattcataagttaggatatcaacaaatgcatcaataaaagaactca--acaaagtttgtttaatgttgattgattgaatttcatctctctcgttac 14180206  T
Q  220 tttcat----------------------ccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcat 297  Q
    ||||||                      |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  14180205 tttcatccaccaaaaacgttactttcatccaccaaaaacataatttttaattggttaatcgaaaaa-aattatagtgatacatatcttaaattgaatcat 14180107  T
Q  298 atacatctccattgaattttcacaacacagcctcacttttttaccattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtat 395  Q
    |||||||||||||||||||||| ||||||  |||||||||||||| ||||        || ||||| ||||||||| |||||||||||||||||||||    
T  14180106 atacatctccattgaattttcaaaacacattctcacttttttacccttcatt------tttttccaagatacgtctctgtgaagtatcttataagtat 14180015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 94 - 290
Target Start/End: Original strand, 2813633 - 2813829
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 193  Q
    ||||||||| |||||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||| |||||||||||||| | |||||    
T  2813633 aaagtttttgtataaatcatattctattttcattcatatgttaggatatcaacaaatatatcaataaaagaactcaaaacaaagtttgtttaatgttgat 2813732  T
Q  194 tgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaatt 290  Q
    ||||| |||||||  |||||| |  ||||||||||||||||  ||||| ||||||| ||||||||||||| ||||||| |||||| |||||||||||    
T  2813733 tgattaaatctcccctctctcgttactttcatccaccaaaattataatatttaatttgttaatcgaaaaataattatagtgattcgtatcttaaatt 2813829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 11558894 - 11558763
Alignment:
Q  140 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacata 239  Q
    |||||||||||||| ||||||||||| |||| ||||| |||||||| | |||||| |||||||||| || ||||  |  ||||||||||||||||| |||    
T  11558894 tatcaacaaatgcaacaataaaagaaatcaaaacaaaatttgtttaatgttgattaattgaatctcataactcttcttactttcatccaccaaaaatata 11558795  T
Q  240 atttttaattggttaatcgaaaaacaattata 271  Q
     ||||||||| ||||||||||||  |||||||    
T  11558794 ttttttaattagttaatcgaaaattaattata 11558763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 341
Target Start/End: Original strand, 18928485 - 18928668
Alignment:
Q  158 taaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatcc-accaaaaacataatttttaattggttaat 256  Q
    ||||||||||||| ||||| ||| |||| |||||||| | |||||| | | |||||| |    ||||||| || ||||| |||||||| || ||||| ||    
T  18928485 taaaagaactcaacacaaattttatttaatattgattaactgaatcacatctctctcgttatcttcatcccacaaaaaatataatttt-aagtggttcat 18928583  T
Q  257 cgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    ||| |||||||| ||||||| ||||||| ||||||||||||||||||||| ||| |||||| ||||||  | |||| ||||||||    
T  18928584 cgagaaacaattctactgatgcatatctaaaattgaatcatatacatctcaattcaatttttacaacattgtctcaattttttac 18928668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 12006820 - 12006746
Alignment:
Q  250 ggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
    |||| ||| |||||||||| || |||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  12006820 ggttcatcaaaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaattttcacaaca 12006746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 31431248 - 31431359
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 193  Q
    |||||||| |||||||||||||| |||||||||||||||||||   |||| ||| |  ||||| ||||||||||||| ||||| ||||| || | |||||    
T  31431248 aaagttttcatataaatcatattatattttcattcatatgttaagatatccacagaaacatcattaaaagaactcaacacaaattttgtctaatcttgat 31431347  T
Q  194 tgattgaatctc 205  Q
    |  |||||||||    
T  31431348 tatttgaatctc 31431359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 6166549 - 6166450
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| || || ||||| || ||||||||||||| ||||||| |||||||||||||||||| |  | |||||||| ||||||  | |||||||||||||    
T  6166549 ttttaagtgtttcatcgagaatcaattatactgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgtctcacttttttac 6166450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 395
Target Start/End: Complemental strand, 32856133 - 32855987
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| ||||||||||||||||||||| | ||||| || ||||||  | ||| |||||||||    
T  32856133 ttttaagtggttcatcgagaaacaattctagtgat-catatctaaaattgaatcatatacatctctactgaatgtttacaacattgtctcgcttttttac 32856035  T
Q  342 cattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtat 395  Q
      ||||       ||| ||| ||||||||| | |||||||||||||||||||||    
T  32856034 tcttca------tctttttctaggatacgtatctgtgaagtatcttataagtat 32855987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 39297500 - 39297637
Alignment:
Q  31 aatactatataattataaaagtcatcatttacag--aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttc 124  Q
    ||||||||||||| ||||||||||  |||||||   |||||||||||||  |||||||||| ||||    |||||||| || | || ||||| |||||||    
T  39297500 aatactatataatcataaaagtcacaatttacaacaaaaaataatacatatgatcaaaataaaaaatttaaagtttttgtaaacattatattttattttc 39297599  T
Q  125 attcatatgttatagtatcaacaaatgcatcaataaaa 162  Q
    ||| |||| |||   |||||||||||| ||||||||||    
T  39297600 atttatatattaggatatcaacaaatgtatcaataaaa 39297637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 395
Target Start/End: Complemental strand, 25430137 - 25429990
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||  |||||||| |||| || ||||||| ||||||||||||||| ||||    |||||||| ||||||  | |||||||||||||    
T  25430137 ttttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattgaatcatatatatctgtcatgaatttttacaacattgtctcacttttttac 25430038  T
Q  342 cattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtat 395  Q
    | ||||       ||| ||| ||||||| | |||| ||||||||||||||||||    
T  25430037 ccttca------tctttttctaggatacatatatgcgaagtatcttataagtat 25429990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 22470822 - 22470724
Alignment:
Q  67 aaataatacatgcgatcaaaatataaa---aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaa 162  Q
    |||||||||||| |||||||||| |||   ||||||||  ||||||||||||||||| ||||||  |||||||   ||||||||||  ||||| |||||    
T  22470822 aaataatacatgtgatcaaaataaaaatataaagttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa 22470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 13003474 - 13003382
Alignment:
Q  244 ttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttt 338  Q
    ||||||| || ||||| |||||||| || | || ||||||| ||||||||||||||||||||  |||||||||  ||||||  | ||||||||||    
T  13003474 ttaattgattcatcgagaaacaattctagttatgcatatctaaaattgaatcatatacatct--attgaatttctacaacattgtctcacttttt 13003382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 18320805 - 18320728
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 339  Q
    ||||| || |||| || ||||||| ||||||||||||||||||||||| | || ||||||||||  | |||||||||||    
T  18320805 aaacatttctacttatgcatatctaaaattgaatcatatacatctccact-aaatttcacaacattgtctcactttttt 18320728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 23877400 - 23877482
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
    |||||| ||||| |||| ||||||||| || | || ||||||| ||||||||||||||| ||||| | ||||| || ||||||    
T  23877400 ttttaagtggttcatcggaaaacaattctagtcatgcatatctaaaattgaatcatatatatctctactgaatgtttacaaca 23877482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 17748925 - 17748970
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctc 306  Q
    |||||||| || |||| |||||| ||||||||||||||||||||||    
T  17748925 aaacaattctagtgatgcatatcataaattgaatcatatacatctc 17748970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 32579186 - 32579149
Alignment:
Q  98 tttttatataaatcatattctattttcattcatatgtt 135  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  32579186 tttttttataaatcatattctattttctttcatatgtt 32579149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 39297675 - 39297724
Alignment:
Q  221 ttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattat 270  Q
    ||||||||| | ||||||||||||||||||| | ||||||||| ||||||    
T  39297675 ttcatccacaataaacataatttttaattggctcatcgaaaaataattat 39297724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 11558736 - 11558684
Alignment:
Q  296 atatacatctccattgaa-ttttcacaacacagcctcacttttttaccattca 347  Q
    |||||||||||||||||| |||||||||||||  |||| ||||||||| ||||    
T  11558736 atatacatctccattgaatttttcacaacacaatctcatttttttacccttca 11558684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 12006992 - 12006839
Alignment:
Q  65 aaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 160  Q
    |||||||||||||| |||||||||| |||    ||||||||  ||||||  ||||| |||||| |||||||||||    |||||| ||| |||| | |||    
T  12006992 aaaaataatacatgtgatcaaaataaaaaatgtaaagttttcttataaactatattatatttttattcatatgttgggatatcaagaaaagcataattaa 12006893  T
Q  161 aagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 214  Q
    |||||||| | ||||| |||||  | | ||||||  |||||||| || ||||||    
T  12006892 aagaactctacacaaattttgtccaatgttgattagttgaatcttctctctctc 12006839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 18320725 - 18320693
Alignment:
Q  363 aggatacgtctatgtgaagtatcttataagtat 395  Q
    ||||||||| |||||||||||||||||||||||    
T  18320725 aggatacgtatatgtgaagtatcttataagtat 18320693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 35537012 - 35536945
Alignment:
Q  279 atatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    |||||| |||||||||| |||||| ||||||||| |||||| ||   || |||||||||||||||||||    
T  35537012 atatctcaaattgaatcttatacacctccattga-ttttcataattgagtctcacttttttaccattca 35536945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 43101083 - 43101019
Alignment:
Q  283 cttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    ||||| |||||| |||| ||||||||||||||||| ||||||  | || ||||||||||| ||||    
T  43101083 cttaagttgaataatatgcatctccattgaattttaacaacatcgtctaacttttttacccttca 43101019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 104 - 342
Target Start/End: Complemental strand, 44746663 - 44746425
Alignment:
Q  104 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 203  Q
    ||||||||||||| ||||||||||||||| |||   ||||||||||||||||||||||| ||||||| |||||||||||||| | ||| |||||||||||    
T  44746663 tataaatcatattttattttcattcatatcttaggatatcaacaaatgcatcaataaaaaaactcaaaacaaagtttgtttaatgttggttgattgaatc 44746564  T
Q  204 tcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 303  Q
    |||| |||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  44746563 tcctctctctcgttactttcatccaccaaaaacataatttataattggttaatcgaaaaacaattatagtaatttatatcttaaattgaatcatatacat 44746464  T
Q  304 ctccattgaattttcacaacacagcctcacttttttacc 342  Q
    ||| ||||||||||||||||| || |||| |||| ||||    
T  44746463 ctcaattgaattttcacaacaaagtctcatttttatacc 44746425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 94 - 342
Target Start/End: Original strand, 43770428 - 43770673
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 193  Q
    ||||||||  |||||||||||||||||| |  |||||| ||||   ||||||||||| ||| ||||||| ||||||| |||| ||||||||| | |||||    
T  43770428 aaagttttcgtataaatcatattctattatatttcatacgttaggatatcaacaaattcattaataaaataactcaaaacaa-gtttgtttaatgttgat 43770526  T
Q  194 tgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaa 293  Q
    ||||||||||| ||  ||||| | |||| |||||| |||||||| ||||||||| ||||||||||||| |||||| || |||||||||||||||||||||    
T  43770527 tgattgaatcttct--ctctcgttgcttacatccaacaaaaacacaatttttaactggttaatcgaaagacaattgtagtgattcatatcttaaattgaa 43770624  T
Q  294 tcatatacatctccattgaattttcacaacacagcctcacttttttacc 342  Q
    |||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  43770625 tcatatacatcttcattgaattttcacaacacagtctcacatttttacc 43770673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 21619888 - 21619592
Alignment:
Q  27 ctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa---aagtttttatataaatcatattctatttt 123  Q
    ||||| ||||||| ||| ||||||||||  ||  ||| |||||||||||||| |||||||||||||||   ||  ||||   |||| || ||||||||||    
T  21619888 ctttattactatacaatcataaaagtcacaatcgacaaaaaaataatacatgtgatcaaaatataaaatataaaattttcg-taaaacacattctatttt 21619790  T
Q  124 cattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttc 223  Q
     ||||||||||||   ||| ||||  ||||||||||||| |||||||   |||||||||||| | |||||||||||||| | ||  ||||| |  | |||    
T  21619789 tattcatatgttaggatattaacacgtgcatcaataaaataactcaaataaaagtttgtttaatgttgattgattgaattttct--ctctcattaccttc 21619692  T
Q  224 atccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatctt-aaattgaatcatatacatctccattgaattttcacaa 322  Q
    |||||| ||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  21619691 atccacaaaaaaaataatttttcattgattaatcgaaaaacaattatactcattcatatcttaaaattgaatcatatacatcttcattgaattttcacaa 21619592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 104 - 342
Target Start/End: Original strand, 22198747 - 22198980
Alignment:
Q  104 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 203  Q
    ||||||||||||  |||||||||| ||||||||   ||||||||||||  | ||    ||||||||| |||||||||||||| | |||||||| ||||||    
T  22198747 tataaatcatatcgtattttcatttatatgttaggatatcaacaaatgtgttaa----agaactcaaaacaaagtttgtttaatgttgattgactgaatc 22198842  T
Q  204 tcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 303  Q
    ||||   |||| |  ||||  ||||||||||| || |||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||    
T  22198843 tcctga-tctcattacttttgtccaccaaaaatatgatttttaattggttaatcgaaaaacaattatagtgattcgtgtcttaaattgaatcatatacat 22198941  T
Q  304 ctccattgaattttcacaacacagcctcacttttttacc 342  Q
    || |||| |||||| |||||||| |||||||||||||||    
T  22198942 cttcatttaatttttacaacacaacctcacttttttacc 22198980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 395
Target Start/End: Original strand, 34075140 - 34075313
Alignment:
Q  219 ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttc 318  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| || ||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  34075140 ctttcatccaccaaaaacataatttttaatttgtta-tcgaaaagcagttatagtgattcatatcttaaattgaatcgtatacatctcaattgaattttc 34075238  T
Q  319 acaacacagcctcacttttttacca-ttcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtat 395  Q
    | ||||||  |||| ||||||  || ||||        |||||| ||||||||||| |||||||||||||||||||||    
T  34075239 ataacacaatctcattttttttacacttcatttttt--ttcttc-aggatacgtctttgtgaagtatcttataagtat 34075313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 10037871 - 10037976
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| |||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||  | |||||||||||||    
T  10037871 ttttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattgaatcatatacatctccattgaattttcgcaacattgtctcacttttttac 10037970  T
Q  342 cattca 347  Q
    | ||||    
T  10037971 ccttca 10037976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 317
Target Start/End: Complemental strand, 34733988 - 34733793
Alignment:
Q  120 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgc 219  Q
    |||||||||||||||||   |||||| ||||||||||||||||  ||| || ||||| ||||||||   |||||| ||| ||| | ||  || || |  |    
T  34733988 ttttcattcatatgttaggatatcaataaatgcatcaataaaaacacttaaaacaaattttgtttaacgttgatttatttaattttct--ctttcgttac 34733891  T
Q  220 tttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaatttt 317  Q
     ||||||||||||||| ||||| |||||||||||||| |||||| |||||| |||||| |||| |||| || ||||| ||| ||||||||||| ||||    
T  34733890 cttcatccaccaaaaatataatatttaattggttaattgaaaaataattatgctgatttatattttaacttaaatcacatatatctccattgattttt 34733793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 395
Target Start/End: Complemental strand, 53586516 - 53586369
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| | ||| ||||| ||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||| || ||||||  | |||||| ||||||    
T  53586516 ttttaagtagttcatcgagaaacaattatagtgatgcatatctgaaattgaatcatatacatctctattgaatgtttacaacattgtctcactattttac 53586417  T
Q  342 cattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtat 395  Q
    | ||||       ||| ||| ||||||||| | |||||||||||||||||||||    
T  53586416 ccttca------tctttttctaggatacgtatctgtgaagtatcttataagtat 53586369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 35823460 - 35823578
Alignment:
Q  96 agtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 195  Q
    ||||||| ||||||||||||| |||||||||||||||||||   |||||| | | |  ||| ||||||||||||| ||||| ||||| || | ||||||     
T  35823460 agtttttttataaatcatattttattttcattcatatgttaggatatcaatagaagtgtcattaaaagaactcaacacaaattttgtataatgttgatta 35823559  T
Q  196 attgaatctcctatctctc 214  Q
    |||||||||| | ||||||    
T  35823560 attgaatctcttctctctc 35823578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 10632355 - 10632247
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 126  Q
    |||| |||||||| ||||| ||||  ||||||| |||||||||||||| |||||||||  |||    ||||||||  ||||||||||||| |||||||||    
T  10632355 aatattatataatcataaatgtcacaatttaca-aaaaataatacatgtgatcaaaattaaaaatgtaaagttttcgtataaatcatattttattttcat 10632257  T
Q  127 tcatatgtta 136  Q
    ||||||||||    
T  10632256 tcatatgtta 10632247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 324
Target Start/End: Complemental strand, 44987522 - 44987299
Alignment:
Q  98 tttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgat 197  Q
    |||||||||| |||||||  |||||||| ||||||||||   | |||||| |  ||||| ||||||||||| |  |||| ||||| || | |||||| ||    
T  44987522 tttttatatagatcatatcatattttcaatcatatgttaagatttcaacataaacatcattaaaagaactcga--caaattttgtataatgttgattaat 44987425  T
Q  198 tgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcat 297  Q
    |||||||| | ||| || |  | ||||||||| | ||  |||||||| || | ||| || || |||||||| ||| ||| ||||||| ||||||||||||    
T  44987424 tgaatctcttctctttcgttaccttcatccacaagaagtataatttt-aagtagttcattgagaaacaattctaccgatgcatatctaaaattgaatcat 44987326  T
Q  298 atacatctccattgaattttcacaaca 324  Q
     |||||||| | |||||||| ||||||    
T  44987325 gtacatctcgagtgaatttttacaaca 44987299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 45774124 - 45774026
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttta 340  Q
    |||||| ||||| ||||| |||||||| || ||||  |||||| ||||||||||||||||||||  | |||||||| ||||||  | ||||||||||||    
T  45774124 ttttaagtggttcatcgagaaacaattctattgatgtatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactttttta 45774026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 28102017 - 28102098
Alignment:
Q  243 tttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
    ||||| ||||| ||||| |||||||| |||| |||||||| | ||||||||| ||||||||||| | |||||||||| ||||    
T  28102017 tttaagtggttcatcgagaaacaattttacttattcatatataaaattgaataatatacatctcaactgaattttcataaca 28102098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 347
Target Start/End: Complemental strand, 4776034 - 4775801
Alignment:
Q  112 atattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatct 211  Q
    ||||| ||||||||| ||||||||||| |||||||| | |||||| | ||||||||||| ||||| ||||| || |   |||| | | |||||||| | |    
T  4776034 atattatattttcatccatatgttataatatcaacataagcatcattgaaagaactcaacacaaattttgtctaatgccgattaactaaatctcctcttt 4775935  T
Q  212 ctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattg 311  Q
    |||      ||||||||| | ||  |||| |||||| ||| | ||||| |||||||||   |||| ||||||| |||||| ||||||||||| |||| |     
T  4775934 ctcgctaacttcatccacaataagtataa-ttttaagtggattatcgagaaacaattactttgatgcatatctaaaattg-atcatatacatttccacta 4775837  T
Q  312 aattttcacaacacagcctcacttttttaccattca 347  Q
    |||| ||||||||  | |||||||||||||| ||||    
T  4775836 aattatcacaacattgtctcacttttttacccttca 4775801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 25204405 - 25204522
Alignment:
Q  156 aataaaagaactcaatacaaagtttgtttactattgattgattgaatctcct-atctctct--tcgctttcatccaccaaaaa-----cataatttttaa 247  Q
    |||||||||| |||| ||||| |||||||| | ||||||||||||||||| | ||||||||  |  ||||||||||  |||||     || |||||||||    
T  25204405 aataaaagaattcaaaacaaattttgtttaatgttgattgattgaatctcatcatctctctggttactttcatccataaaaaaaaaaacacaatttttaa 25204504  T
Q  248 ttggttaatcgaaaaaca 265  Q
    ||||||||||||||||||    
T  25204505 ttggttaatcgaaaaaca 25204522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 27675536 - 27675450
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    |||||||| || |||| ||||||| |||||||||||||||||||||   ||||| |||||||||  | |||||| ||||||| ||||    
T  27675536 aaacaattctattgatgcatatctaaaattgaatcatatacatctctgctgaatcttcacaacattgtctcactattttacccttca 27675450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 35823602 - 35823700
Alignment:
Q  249 tggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    ||||| ||||| |||||||| |||| |||||||||| ||||||||| |||||||| |||| |   |||||||||||  | |||||||| ||||| ||||    
T  35823602 tggtttatcgagaaacaattctactaattcatatctaaaattgaattatatacatttccaatattttttcacaacattgtctcactttcttacccttca 35823700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 35103543 - 35103620
Alignment:
Q  264 caattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||||| |||| ||||||| |||||||||||||||||| |  | |||||||| ||||||  | |||||||||||||    
T  35103543 caattataatgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgtctcacttttttac 35103620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 47724673 - 47724735
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 94  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  47724673 aatactatataatcataaaagtcgcaatttaca-aaaaataatacatgtgatcaaaataaaaaa 47724735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 38947679 - 38947745
Alignment:
Q  73 tacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgtt 135  Q
    |||||| |||||||||||||||    || ||||  ||||||| ||||||||||||||||||||||||    
T  38947679 tacatgtgatcaaaatataaaatataaaattttcgtataaattatattctattttcattcatatgtt 38947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 35 - 342
Target Start/End: Original strand, 31396988 - 31397298
Alignment:
Q  35 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcat 130  Q
    ||||||||| ||||||||||  ||||||| |||| |||||| || |||||||||| ||||    || |||| |||||||||||||| |||||| ||| ||    
T  31396988 ctatataatcataaaagtcacaatttaca-aaaagtaatacttgtgatcaaaataaaaaatataaaattttcatataaatcatattttatttttatttat 31397086  T
Q  131 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccacc 230  Q
    |||||    ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| || | |||||| |  ||||||| ||||    
T  31397087 atgttgggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattgattgaatatcttctctctcgttactttcattcacc 31397186  T
Q  231 aaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcct 330  Q
    || ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| || |||||| |||||||||||||||| ||    
T  31397187 aataacataattttcaattggttaattgaaaaacaattatagtgatttatatcttaaattgagtcatatatatttccattcaattttcacaacacagtct 31397286  T
Q  331 cacttttttacc 342  Q
    ||||||||||||    
T  31397287 cacttttttacc 31397298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 35 - 326
Target Start/End: Original strand, 44797994 - 44798287
Alignment:
Q  35 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcattcat 130  Q
    ||||||||| ||||||||||  ||||||| ||||| |||||||| |||||||||| |||    ||||||||  ||||||||||||| |||||||||||||    
T  44797994 ctatataatcataaaagtcacaatttacaaaaaaaaaatacatgtgatcaaaataaaaattgtaaagttttcgtataaatcatattatattttcattcat 44798093  T
Q  131 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccacc 230  Q
    ||||||   ||||||||||||  ||||||||||||||||| ||||||||| ||||   |||||||||||||||| ||  ||||| |  |||| |||||||    
T  44798094 atgttaggatatcaacaaatgtttcaataaaagaactcaaaacaaagtttatttaacgttgattgattgaatcttct--ctctcgttacttttatccacc 44798191  T
Q  231 aaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacaca 326  Q
    |||||||||| ||||||||||||||| || ||| ||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  44798192 aaaaacataaattttaattggttaattgagaaataattatagtgattcatatcttaaattgaaacacatacatctccactgaattttcacaacaca 44798287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 220 - 399
Target Start/End: Complemental strand, 48138635 - 48138463
Alignment:
Q  220 tttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttca 319  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  48138635 tttcatccaccaaaaacataatttttaattggtta-tcgaaaaataattatagtgattcatatcttaaattgaatcatatacatctccattaaattttca 48138537  T
Q  320 caacacagcctcacttttttaccattcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtatttgt 399  Q
     ||||||| |||| || ||||   ||||        || ||||||||||||||| |||||||||||||||||||||||||    
T  48138536 gaacacagtctcatttatttaagcttcatt------tttttccaggatacgtctctgtgaagtatcttataagtatttgt 48138463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 340
Target Start/End: Original strand, 46192231 - 46192383
Alignment:
Q  188 attgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaa 287  Q
    |||||| ||||||||||| | | |||| |  |||||||||| |||||||||| ||||||  || ||||| |||||||||||||  |||||||||||||||    
T  46192231 attgatagattgaatctcatctatctcgttactttcatccaacaaaaacatattttttatatgattaatagaaaaacaattattgtgattcatatcttaa 46192330  T
Q  288 attgaatcatatacatctccattgaattttcacaacacagcctcactttttta 340  Q
    ||| |||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  46192331 attaaatcatatacatcttcattgaattttcacaacacattctcactttttta 46192383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 321
Target Start/End: Complemental strand, 16818034 - 16817877
Alignment:
Q  157 ataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaat 256  Q
    |||||||||||||| | |||  ||||||| | ||||||||||||||||    |||||| || ||| ||| | |  ||||||||| ||| ||||| |||||    
T  16818034 ataaaagaactcaaaagaaatattgtttaatgttgattgattgaatct----tctctcgtcactt-cattctcacaaaacataaatttaaattgattaat 16817940  T
Q  257 cgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcaca 321  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||    
T  16817939 cgaaaaacaattatactgattca-atcttaaattaaatcatatacatctccattg-attttcaca 16817877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 24699882 - 24699810
Alignment:
Q  222 tcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatc 295  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||    
T  24699882 tcatccaccaaaaacataatttttaattggtta-tcgaaaaacaattatagtaattcatatcttaaattgaatc 24699810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 47278002 - 47277897
Alignment:
Q  95 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 194  Q
    |||||||| ||||||| || ||||||||||| |||||| |||   ||||||||||||| |||||||||||| |||| |||||||||| ||| | ||||||    
T  47278002 aagtttttgtataaataattttctattttcactcatatattaggatatcaacaaatgcttcaataaaagaattcaaaacaaagtttgattaatgttgatt 47277903  T
Q  195 gattga 200  Q
    ||||||    
T  47277902 gattga 47277897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 2483847 - 2483783
Alignment:
Q  277 tcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||    
T  2483847 tcatatcttaaattgaatcatatacatcttcattgcattttcacaacatagtctcacttttttac 2483783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 25482609 - 25482674
Alignment:
Q  240 atttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 305  Q
    |||||||| || || ||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  25482609 atttttaagtgtttcatcgaaaaacaattatattgatgcatatctaaaattgaatcatatacatct 25482674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 48138767 - 48138659
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 126  Q
    ||||||||||||| |||||| |||  ||||||| |||||||||| ||| |||||||||| ||||    |||||||  ||||||||||||| ||||||| |    
T  48138767 aatactatataatcataaaattcacaatttaca-aaaaataatatatgtgatcaaaataaaaaatgtaaagttttcgtataaatcatattatattttcgt 48138669  T
Q  127 tcatatgtta 136  Q
    ||||||||||    
T  48138668 tcatatgtta 48138659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 45648231 - 45648330
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| | ||| |||||||| || |||| ||||||| ||||||||||||||||||||  | |||||||| ||||||  | |||||||||||||    
T  45648231 ttttaagtggttcaccgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttac 45648330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 47277199 - 47277149
Alignment:
Q  296 atatacatctccattgaattttcacaacacagcctcacttttttaccattc 346  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  47277199 atatacatctctattgaattttcacaacacaatctcacttttttaccattc 47277149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 3094303 - 3094258
Alignment:
Q  263 acaattatactgattcatatcttaaattgaatcatatacatctcca 308  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  3094303 acaattaaactaattcatatcttaaattgaatcatatacatctcca 3094258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 3751503 - 3751600
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 339  Q
    |||||| || || ||||| |||||||| || |||| ||||||| ||||||||||||||||||||| | | | |||||||||||  | |||||||||||    
T  3751503 ttttaagtgattcatcgagaaacaattttattgatgcatatctaaaattgaatcatatacatctctactaagttttcacaacattgtctcactttttt 3751600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 22201353 - 22201255
Alignment:
Q  104 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 202  Q
    ||||||||||||| ||||||||||||||  ||| | ||||| || | | |||| ||||| | ||||| ||||| ||||| ||||||||||| |||||||    
T  22201353 tataaatcatattatattttcattcatacattagaatatcagcagaagtatcattaaaatagctcaacacaaattttgtctactattgattaattgaat 22201255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 22236468 - 22236566
Alignment:
Q  104 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 202  Q
    ||||||||||||| ||||||||||||||  ||| | ||||| || | | |||| ||||| | ||||| ||||| ||||| ||||||||||| |||||||    
T  22236468 tataaatcatattatattttcattcatacattagaatatcagcagaagtatcattaaaatagctcaacacaaattttgtctactattgattaattgaat 22236566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 47843793 - 47843879
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    |||||||| || |||| ||||||| ||||||||||||||||||||| | ||| |||| ||||||  | || ||||||||||| ||||    
T  47843793 aaacaattttattgatgcatatctaaaattgaatcatatacatctctactgagtttttacaacattgtctaacttttttacccttca 47843879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 7858003 - 7857938
Alignment:
Q  240 atttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 305  Q
    |||||||| ||||| |  || |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  7858003 atttttaagtggttcaatgagaaacaattctactgtttcatatctaaaattgaatcatatacatct 7857938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 347
Target Start/End: Complemental strand, 22201214 - 22201110
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| |||||||| ||| ||| || |||| ||||| || |||||||||||||| |||||||| | ||||  | |||| ||||||||    
T  22201214 ttttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtctcatttttttac 22201116  T
Q  342 cattca 347  Q
    ||||||    
T  22201115 cattca 22201110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 22236607 - 22236711
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| |||||||| ||| ||| || |||| ||||| || |||||||||||||| |||||||| | ||||  | |||| ||||||||    
T  22236607 ttttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtctcatttttttac 22236705  T
Q  342 cattca 347  Q
    ||||||    
T  22236706 cattca 22236711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 40836503 - 40836439
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 306  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| ||||||||||||||| |||||    
T  40836503 ttttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatagatctc 40836439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 339
Target Start/End: Original strand, 42040377 - 42040561
Alignment:
Q  152 catcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattgg 251  Q
    ||||||||||||||||||| ||||| ||| | || | |||||| | |||||| |  |||||||   || ||||||||| | ||  |||||||| || ||     
T  42040377 catcaataaaagaactcaacacaaattttatctaatgttgattaactgaatcac--atctctcgatgcgttcatccacaagaagtataatttt-aagtgt 42040473  T
Q  252 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 339  Q
    || ||||| | |||||| || |||| ||||||| ||||||| ||||||||||||  | |||||||| ||||||  | |||||||||||    
T  42040474 ttcatcgagagacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcactttttt 42040561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 43495761 - 43495825
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 306  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| ||||||||||||||| |||||    
T  43495761 ttttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatatatctc 43495825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 34471761 - 34471728
Alignment:
Q  363 aggatacgtctatgtgaagtatcttataagtatt 396  Q
    ||||||||| ||||||||||||||||||||||||    
T  34471761 aggatacgtatatgtgaagtatcttataagtatt 34471728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 9229429 - 9229488
Alignment:
Q  34 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 94  Q
    |||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  9229429 actatataatcataaaagtcgcgatttaca-aaaaataatacatgtgatcaaaataaaaaa 9229488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 16817846 - 16817806
Alignment:
Q  359 ttccaggatacgtctatgtgaagtatcttataagtatttgt 399  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  16817846 ttccaggatacgtatttgtgaagtatcatataagtatttgt 16817806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 25311012 - 25311076
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 306  Q
    |||||| ||||| ||| | |||||||||||||| | ||||| | ||||| |||||||||||||||    
T  25311012 ttttaagtggttcatcaagaaacaattatactgttgcatatttaaaatttaatcatatacatctc 25311076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 31 - 336
Target Start/End: Complemental strand, 7732545 - 7732241
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaagt-----ttttatataaatcatattctattttca 125  Q
    ||||||||||||| ||||||||||  ||||| | ||||||||||  || | |||||||| ||||| ||     |||| ||||||||||  | ||||||||    
T  7732545 aatactatataatcataaaagtcacaatttata-aaaaataatatgtgtggtcaaaataaaaaaatgtaaattttttgtataaatcat--tatattttca 7732449  T
Q  126 ttcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcat 225  Q
    ||||||||||| | |||||| ||||||||||||||||||||| || || ||||||||||  | |||||||||| ||||||||  |||||||  |||||||    
T  7732448 ttcatatgttagaatatcaataaatgcatcaataaaagaacttaaaacgaagtttgtttcatgttgattgattaaatctcct--ctctctta-ctttcat 7732352  T
Q  226 ccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacac 325  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  7732351 ccaccaaaaacataatttttaattggctaatcgaaaaacagttatagtgattcatatcttaaattgaatcatatacatatccgttgaattttcacaacac 7732252  T
Q  326 agcctcacttt 336  Q
    | |||||||||    
T  7732251 atcctcacttt 7732241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 42990820 - 42990701
Alignment:
Q  219 ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttc 318  Q
    ||||||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42990820 ctttcatccaccaaaaacataatttttaattagtta-tcgaacaacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttc 42990722  T
Q  319 acaacacagcctcactttttt 339  Q
    ||||||||| |||| ||||||    
T  42990721 acaacacagtctcattttttt 42990701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 172 - 347
Target Start/End: Complemental strand, 12118496 - 12118323
Alignment:
Q  172 acaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattata 271  Q
    ||||| |||||||| ||||| |||| |||||||  ||| | || |  | ||||||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  12118496 acaaattttgtttaatattggttgactgaatcttatatttttcattaccttcatccaccaaaaatataatttttaattagttaatcgaaaaacagttata 12118397  T
Q  272 ctgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||   ||||||||||||| ||||    
T  12118396 ctgattcatatcttaaattgaatcatatacattttcattgaattttcacaacaca--ttcacttttttacccttca 12118323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 125 - 347
Target Start/End: Complemental strand, 41634610 - 41634401
Alignment:
Q  125 attcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttca 224  Q
    |||||||||||| | |||||||||||||||||||||||||||| || | |||||||||||| | |||||||||||||| |||| |||||| |  | ||||    
T  41634610 attcatatgttagaatatcaacaaatgcatcaataaaagaactaaaaataaagtttgtttaatgttgattgattgaatgtcctctctctcgttaccttca 41634511  T
Q  225 tccac-caaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaac 323  Q
    ||||| |||||| ||| |||||||||  |||||||| |||              ||||||||||||||||| ||||||||||||||||||||||||||||    
T  41634510 tccacacaaaaaaatagtttttaattaattaatcgataaa--------------catatcttaaattgaatgatatacatctccattgaattttcacaac 41634425  T
Q  324 acagcctcacttttttaccattca 347  Q
    |||  ||||| |||||||| ||||    
T  41634424 acaatctcacctttttacccttca 41634401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 95 - 337
Target Start/End: Original strand, 12848318 - 12848545
Alignment:
Q  95 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 194  Q
    |||||||  ||||||| |||||||||||| |||||||| |||    |||||||||| |||||||||| |||||||| |||||||||||||| | || |||    
T  12848318 aagttttcgtataaattatattctatttttattcatatattaggacatcaacaaatacatcaataaaggaactcaaaacaaagtttgtttaatgttaatt 12848417  T
Q  195 gattgaatctcctatctctct--tcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattga 292  Q
    ||||||||    |||||||||  |  |  ||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||             |||||    
T  12848418 gattgaat----tatctctctcgttaccctcatccaacaaaaacataattttaaattgattaatcgaaaaacaattatattg-------------attga 12848500  T
Q  293 atcatatacatctccattgaattttcacaacacagcctcactttt 337  Q
    || ||||||||||||||||||||||||||||| || |||||||||    
T  12848501 attatatacatctccattgaattttcacaacaaagactcactttt 12848545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 27972159 - 27972008
Alignment:
Q  189 ttgattgattgaatctcctatctctct--tcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatctta 286  Q
    ||||||||||||||||||| |||||||  |  | || |||||||||||||||| |||| ||||||||| || ||||| |||| ||| |||||||||||||    
T  27972159 ttgattgattgaatctcctttctctctcgttacctttatccaccaaaaacatagttttgaattggttagtcaaaaaataattttaccgattcatatctta 27972060  T
Q  287 aattgaatcatatacatctccattgaattttcacaacacagcctcacttttt 338  Q
    ||||||||| |||||||||  ||| ||||||||||| |||  ||||||||||    
T  27972059 aattgaatcttatacatctttattaaattttcacaatacaaactcacttttt 27972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 341
Target Start/End: Original strand, 2627883 - 2628069
Alignment:
Q  158 taaaagaactcaatacaaagtttgtttactattgattgattgaatctcct----atctctcttcgctttcatccaccaaaaacataatttttaattggtt 253  Q
    ||||| ||||||| ||||| ||| |||| | |||||| |||||||| |||    |||||||||  | |||||||||  |||  |||||||| || |||||    
T  2627883 taaaataactcaacacaaattttatttaatgttgattaattgaatcacctctctatctctctttaccttcatccacagaaagtataatttt-aagtggtt 2627981  T
Q  254 aatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
     ||||| |||||||| || | || ||||||| ||||||||||||||||||||| | ||||| || ||||||| | |||||||||||||    
T  2627982 catcgataaacaattctaattatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacactgtctcacttttttac 2628069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 5836624 - 5836542
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
    |||||| ||||| ||||| |||||||||||| ||| ||||| | |||||||||||||||||||| || |||||||||||||||    
T  5836624 ttttaagtggttcatcgagaaacaattataccgatacatatataaaattgaatcatatacatcttcactgaattttcacaaca 5836542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 16756084 - 16756181
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 339  Q
    |||||| |||| |||||| |||||||| |||| || ||||||| |||||||||||||||||||||| ||||| |||| |||||  | |||||||||||    
T  16756084 ttttaagtggtcaatcgataaacaattttactaatgcatatctaaaattgaatcatatacatctccgttgaactttcgcaacattgtctcactttttt 16756181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 39329670 - 39329596
Alignment:
Q  107 aaatcatattctattttcattcatatgttatag-tatcaacaaatgcatcaataaaagaactcaatacaaagtttg 181  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||||| ||||||||| |||| ||||||||||    
T  39329670 aaattatattctattttcattcatatatt-tagatatcaacaaatgcatcgataaaagaattcaaaacaaagtttg 39329596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 8802687 - 8802777
Alignment:
Q  104 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 194  Q
    ||||||||||||| |||||| ||||||||||||   |||||| | | ||||||  |||||||||||| ||||| |||||||| ||||||||    
T  8802687 tataaatcatattatatttttattcatatgttaggatatcaatagaagcatcatcaaaagaactcaacacaaattttgtttaatattgatt 8802777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 26016613 - 26016672
Alignment:
Q  263 acaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaa 322  Q
    |||||| |||| ||||||||| |||| ||||||||||||||||| |||||||| ||||||    
T  26016613 acaattctactaattcatatcctaaactgaatcatatacatctctattgaattctcacaa 26016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 26565070 - 26564971
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||| | ||||||||||| |||| ||||||| ||||||||||||||||||  | ||||||| || ||||||    |||||||||||||    
T  26565070 ttttaagtggtttatcaagaaacaattatagtgatacatatctaaaattgaatcatatacattgctattgaatgtttacaacattatctcacttttttac 26564971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 41634766 - 41634663
Alignment:
Q  35 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcat 130  Q
    ||||||||| ||||||||||| ||||| | || || |||||||| |||||||| | ||||    | |||||  |||||||||||||||||||||||||||    
T  41634766 ctatataatcataaaagtcataatttaaaaaagaa-aatacatgtgatcaaaacaaaaaatgtaatgttttcgtataaatcatattctattttcattcat 41634668  T
Q  131 atgtt 135  Q
    |||||    
T  41634667 atgtt 41634663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 13407268 - 13407326
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatata 300  Q
    |||||| ||||| ||||| ||||||||||||||||  |||||| |||||||||||||||    
T  13407268 ttttaactggttcatcgagaaacaattatactgatgtatatctaaaattgaatcatata 13407326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 29231085 - 29231183
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttta 340  Q
    |||||| || || ||||| |||||||| || |||| ||||||| ||||||| ||||||||||||  | |||||||| ||||||  | ||||||||||||    
T  29231085 ttttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcactttttta 29231183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 347
Target Start/End: Complemental strand, 39329588 - 39329530
Alignment:
Q  289 ttgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattca 347  Q
    ||||||| |||||||||||||| ||||||||| |||||  |||||||||||||| ||||    
T  39329588 ttgaatcttatacatctccatttaattttcacgacacaatctcacttttttacccttca 39329530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 36906852 - 36906776
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaa 170  Q
    |||||||| ||||||| |||||| ||||||||||||| |||||   ||||||||||  ||| | |||||||||||||    
T  36906852 aaagttttcatataaagcatattatattttcattcatttgttaggatatcaacaaaaacattattaaaagaactcaa 36906776  T

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Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 39700891 - 39700923
Alignment:
Q  104 tataaatcatattctattttcattcatatgtta 136  Q
    |||||||||||||||||||||||||||||||||    
T  39700891 tataaatcatattctattttcattcatatgtta 39700923  T

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Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 7612676 - 7612609
Alignment:
Q  252 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttca 319  Q
    |||||| | ||||||||||| |||||  ||||||||||||||||||||| ||||| | | ||||||||    
T  7612676 ttaatcaagaaacaattataatgatttctatcttaaattgaatcatataaatctctactaaattttca 7612609  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 5836750 - 5836653
Alignment:
Q  110 tcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcct 207  Q
    ||||||| || ||||||||| ||||||   |||||||| | |||||| ||||||||||||| ||||| ||| | || |  ||||| ||||||||||||    
T  5836750 tcatattgtactttcattcagatgttaggatatcaacataagcatcattaaaagaactcaacacaaattttatctaatggtgattaattgaatctcct 5836653  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 31114025 - 31114070
Alignment:
Q  261 aaacaattatactgattcatatcttaaattgaatcatatacatctc 306  Q
    |||||||| |||| || ||||||| |||||||||||||||||||||    
T  31114025 aaacaattttactaatgcatatctaaaattgaatcatatacatctc 31114070  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 7057215 - 7057119
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttt 338  Q
    |||||| | ||| ||||| | |||||||||||||| ||||| | ||  ||||||||||||||||| | |||||||  ||||||  | ||||||||||    
T  7057215 ttttaagttgttcatcgagacacaattatactgatccatatgtaaatgtgaatcatatacatctctactgaatttctacaacattgtctcacttttt 7057119  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 347
Target Start/End: Original strand, 32076545 - 32076649
Alignment:
Q  243 tttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 342  Q
    ||||| |||||  |||| |||||||| || |||| ||||||| ||||||||  ||| ||||||| | |||| ||| ||||||  | ||||||||||||||    
T  32076545 tttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctctactgaaattttacaacattgtctcacttttttacc 32076644  T
Q  343 attca 347  Q
     ||||    
T  32076645 cttca 32076649  T

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Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 115 - 347
Target Start/End: Original strand, 24611339 - 24611573
Alignment:
Q  115 ttctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 214  Q
    ||||||||| |||||||| ||| |  |||||||||||| ||||||||||||||||| |  ||||||||||| | ||||||||||||||||||| |||| |    
T  24611339 ttctatttttattcatatattagaaaatcaacaaatgcttcaataaaagaactcaaaatcaagtttgtttaatgttgattgattgaatctcctctctccc 24611438  T
Q  215 t--tcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattga 312  Q
    |  |  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  24611439 tcgttactttcaaccaccaaaaacataatttttaattggttaattgaaaaacaattatagtgattcatatattaaattgaatcatatacatctccattga 24611538  T
Q  313 attttcacaacacagcctcacttttttaccattca 347  Q
     |||||||||||||  |||||||||||||| ||||    
T  24611539 tttttcacaacacaatctcacttttttacccttca 24611573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 94 - 399
Target Start/End: Original strand, 31489382 - 31489684
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 193  Q
    ||||||||  ||||||||||||| |||||||||||||||||||   ||||| ||||||||||||||||||||||||| ||||| |||||||| | |||||    
T  31489382 aaagttttcgtataaatcatattttattttcattcatatgttaagatatcagcaaatgcatcaataaaagaactcaaaacaaaatttgtttaatgttgat 31489481  T
Q  194 tgattgaatctcctatctctct----tcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaat 289  Q
    ||||| |||||  |||||||||    || | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | ||||||||    
T  31489482 tgattaaatctattatctctctcttgtcaccttcatccaccaaaaacataaattttaattggttaatcgaaaaacaatcatactgattcgtgtcttaaat 31489581  T
Q  290 tgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcannnnnnncttcttccaggatacgtctatgtgaagtatcttat 389  Q
    |||||||||||||| | |||||||||||||||| ||   ||||| |||||||| ||||        || || ||||||| |||||||||| ||||||||     
T  31489582 tgaatcatatacat-ttcattgaattttcacaatacgctctcacatttttacccttcatt------tttttgcaggatatgtctatgtgacgtatcttac 31489674  T
Q  390 aagtatttgt 399  Q
    ||||||||||    
T  31489675 aagtatttgt 31489684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 94 - 341
Target Start/End: Complemental strand, 50387442 - 50387204
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 193  Q
    ||||||||  |||||||||||||||||||||||| |||||||| | ||| ||||||| |||||||||| |||||| | | |||||||||||| | |||||    
T  50387442 aaagttttcgtataaatcatattctattttcatttatatgttagaatattaacaaatacatcaataaaggaactc-agataaagtttgtttaatgttgat 50387344  T
Q  194 tgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaa 293  Q
    |||||||||||||  |||||| |  ||||||||||||||||||||||||||||||||||||||  ||||| ||||||| || ||||||| ||||||||||    
T  50387343 tgattgaatctcc--tctctcgttactttcatccaccaaaaacataatttttaattggttaat--aaaaataattatagtggttcatattttaaattgaa 50387248  T
Q  294 tcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||||    | ||||||||||| ||||||||  |||| ||||||||    
T  50387247 tcatata----tacattgaattttaacaacacaaactcatttttttac 50387204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 303
Target Start/End: Complemental strand, 21842863 - 21842588
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 126  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||||||| ||     ||||| |   || |||| ||||| |||||||||    
T  21842863 aatactatataatcataaaagtcacgatttac-gaaaaataatacatg--atcaaaataaaagttgtaaagtctacgtaaaaattatattttattttcat 21842767  T
Q  127 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcg--ctttca 224  Q
    ||||| |||    ||||||||||| ||||||||||| ||||  | ||||||||| |||| | |||||||||||||| |||| |||||||| |  |||| |    
T  21842766 tcataagtttggatatcaacaaatacatcaataaaaaaactataaacaaagtttatttaatgttgattgattgaatatcctttctctcttggtactttta 21842667  T
Q  225 tccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 303  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||    
T  21842666 tccaccaaaaatataatttttatttggttaatcgaaatacaattatagcgattcatatcttaaatttaatcatatacat 21842588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 218 - 341
Target Start/End: Complemental strand, 47014400 - 47014278
Alignment:
Q  218 gctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaatttt 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||    
T  47014400 gctttcatccacccaaaacataatttttaattggttaatcgaaaaacaattataatgatttatatc-taaattgaatcatatacatcttcattgaatttt 47014302  T
Q  318 cacaacacagcctcacttttttac 341  Q
    ||||||| |  |||||||||||||    
T  47014301 cacaacatattctcacttttttac 47014278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 303
Target Start/End: Complemental strand, 21858504 - 21858231
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 126  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||||||| ||     ||||| |   || |||| |||||||||||||||    
T  21858504 aatactatataatcataaaagtcacgatttac-gaaaaataatacatg--atcaaaataaaagttgtaaagtctacgtaaaaattatattctattttcat 21858408  T
Q  127 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcgctttcatc 226  Q
    ||||| |||    ||||||||| | ||||||||||| |||   | ||||||||| |||| | |||||||||||||| |||| ||||||    |||| |||    
T  21858407 tcataagtttggatatcaacaactacatcaataaaaaaacaataaacaaagtttatttaatgttgattgattgaatatcctctctctcggtacttttatc 21858308  T
Q  227 caccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 303  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||    
T  21858307 caccaaaaatataatttttatttggttaatcgaaatacaattatagcgattcatatcttaaatttaatcatatacat 21858231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 219 - 325
Target Start/End: Complemental strand, 43471911 - 43471806
Alignment:
Q  219 ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttc 318  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  43471911 ctttcatccaacaaaaacataatttttaattggtta-tcgaaaaacagttatagtgattcatatcttaaattgaatcatatacatctcaattgaattttc 43471813  T
Q  319 acaacac 325  Q
    |||||||    
T  43471812 acaacac 43471806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 219 - 347
Target Start/End: Original strand, 1341658 - 1341786
Alignment:
Q  219 ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttc 318  Q
    |||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||    
T  1341658 ctttcatccacccaaagcataatttttaattagttaatcgaaaaacaattataatgattcatatcttaaaatgaatcatatgcatctctattgaattttc 1341757  T
Q  319 acaacacagcctcacttttttaccattca 347  Q
    ||||||||   | ||||||||||| ||||    
T  1341758 acaacacaatataacttttttacccttca 1341786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 47014676 - 47014501
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 126  Q
    ||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||| ||||    ||| |||   ||||||||||||| ||||||||    
T  47014676 aatactatataatcataaaagttataatttaca-aaaaataatacatgcgatcaaaataaaaaatgtaaagatttcgcataaatcatattcgattttcat 47014578  T
Q  127 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 203  Q
    ||||||||||   |||||||||||||||||||||||||||| || |||||||| ||||| | ||||||| |||||||    
T  47014577 tcatatgttaggatatcaacaaatgcatcaataaaagaactaaaaacaaagttcgtttaatgttgattggttgaatc 47014501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 24121190 - 24121073
Alignment:
Q  231 aaaaacataatttttaattggttaat-cgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcc 329  Q
    ||||||| |||||||||||||||||  ||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||| |||||||||||||  |    
T  24121190 aaaaacacaatttttaattggttaaagcgaaaaacaattacagtgattcatatcttaaattgaatcaaatacacctccattgatttttcacaacacattc 24121091  T
Q  330 tcacttttttaccattca 347  Q
    ||||||||||||| ||||    
T  24121090 tcacttttttacccttca 24121073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 21854013 - 21853839
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 126  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||||  |||||||||| |||     ||||  |  |||||||||||||||||||||||    
T  21854013 aatactatataatcataaaagtcacgatttacagaaaa-taatacatatgatcaaaataaaaattgtgaagtgatc-tataaatcatattctattttcat 21853916  T
Q  127 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 203  Q
    ||||||||||   ||||||||||||||||||||||||||||| | ||||| ||| |||| | |||||||||||||||    
T  21853915 tcatatgttaggatatcaacaaatgcatcaataaaagaactctaaacaaattttatttaatgttgattgattgaatc 21853839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 166 - 324
Target Start/End: Complemental strand, 20619452 - 20619294
Alignment:
Q  166 ctcaatacaaagtttgtttactattgattgattgaatctcctatctctct-tcgct-ttcatccaccaaaaacataatttttaattggttaatcgaaaaa 263  Q
    ||||||||||| ||||| || || || || |||||||||| | ||||||| || || ||||||||| | ||| |||||||| || ||||| |||||||||    
T  20619452 ctcaatacaaattttgtctattagtggttaattgaatctc-tctctctctctctctcttcatccacaagaaatataatttt-aagtggttgatcgaaaaa 20619355  T
Q  264 caattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
     ||||||||| || ||||||| |||||||||||||||||| |||| |||||||||||||||    
T  20619354 taattatacttatgcatatctaaaattgaatcatatacatttccactgaattttcacaaca 20619294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 277
Target Start/End: Complemental strand, 8913685 - 8913548
Alignment:
Q  141 atcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctcttcg--ctttcatccaccaaaaacat 238  Q
    |||||||||||||||||||||| ||||||| ||||||||| |||  | ||||||||||||||   || |||||||||   |  |  || ||||||| |||    
T  8913685 atcaacaaatgcatcaataaaaaaactcaaaacaaagtttattttatgttgattgattgaattgtctctctctcttcttaccctagtcaaccaaaa-cat 8913587  T
Q  239 aatttttaattggttaatcgaaaaacaattatactgatt 277  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  8913586 aatttttaattggttaatcgaaaaacaattatattgatt 8913548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 29324196 - 29324097
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||||| ||||||||||| |||| ||||||| ||||||||| ||||||||||  |||||| ||| ||||||  |||||||||||||||    
T  29324196 ttttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaatgatatacatctttattgaagttttacaacattgcctcacttttttac 29324097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 53530563 - 53530673
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 193  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||  ||| | || | | || | ||||||||||||| ||||| |||||||| |||||||    
T  53530563 aaagttttcgtataaatcatattcgattttcattcatatcttatgatattagcagaagtattattaaaagaactcaacacaaattttgtttaatattgat 53530662  T
Q  194 tgattgaatct 204  Q
    | |||||||||    
T  53530663 taattgaatct 53530673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 24121372 - 24121239
Alignment:
Q  32 atactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcatt 127  Q
    |||||||||||| ||||||||||  ||||||  |||||||||| |||  ||||||||||||||    || ||||   ||||| ||||||||||||| |||    
T  24121372 atactatataatcataaaagtcacaatttacc-aaaaataatatatgttatcaaaatataaaatataaaattttcgaataaaacatattctatttttatt 24121274  T
Q  128 catatgttatagtatcaacaaatgcatcaataaaa 162  Q
    ||||| |||  | ||||||||||||||||||||||    
T  24121273 catatattagggaatcaacaaatgcatcaataaaa 24121239  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 395
Target Start/End: Original strand, 27164037 - 27164181
Alignment:
Q  243 tttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 342  Q
    ||||| ||||| ||||| ||| ||||||| |||| ||||||| ||||||||||||||||||||| | |||||||  |||||   | ||||||||||| ||    
T  27164037 tttaagtggttcatcgagaaataattatattgatgcatatctaaaattgaatcatatacatctctactgaatttctacaacgttgtctcactttttt-cc 27164135  T
Q  343 attcannnnnnncttcttccaggatacgtctatgtgaagtatcttataagtat 395  Q
     ||||       ||| ||| ||||||||| |||||||||||||||||||||||    
T  27164136 cttca------tctt-ttctaggatacgtatatgtgaagtatcttataagtat 27164181  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 38489734 - 38489816
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 324  Q
    |||||| ||||| ||||| ||||||||||| | || ||||||| ||||||||||||||||||||| | ||||| || ||||||    
T  38489734 ttttaagtggttcatcgagaaacaattatagttatgcatatctaaaattgaatcatatacatctctactgaatgtttacaaca 38489816  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 43471974 - 43471932
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgtta 136  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  43471974 aaagttttcatataaatcatattctattttcattcatatgtta 43471932  T

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Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 45472701 - 45472615
Alignment:
Q  255 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    ||||| |||||||| || |||| ||||||| ||||||||||||||||||||| ||||||| || ||||||  | || ||||||||||    
T  45472701 atcgagaaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaacattgtctaacttttttac 45472615  T

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Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 16343210 - 16343146
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaa 95  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| |||||    
T  16343210 aatactatataatcataaaagtcgcaatttacaaaaaaataatacatgtgatcaaaataaaaaaa 16343146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 20369268 - 20369354
Alignment:
Q  255 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 342  Q
    ||||| ||||||||||| |||| || |||| ||||||||||||||||||||| | | |||||||||||||  |  |||||||||||||    
T  20369268 atcgagaaacaattatattgatgca-atctaaaattgaatcatatacatctcaaattaattttcacaacattgtatcacttttttacc 20369354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 1341547 - 1341622
Alignment:
Q  65 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgtta 136  Q
    |||||||||||| | |||||||||| ||||    ||||||| ||||||| |||||| |||||||||||||||||||    
T  1341547 aaaaataatacacgtgatcaaaataaaaaatgtaaagttttcatataaaacatattttattttcattcatatgtta 1341622  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 2111534 - 2111477
Alignment:
Q  225 tccaccaaaaacataatttttaattggttaatcg-aaaaacaattatactgattcatat 282  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  2111534 tccacaaaaaacataatttttaattggtt-atcgaaaaaacaattatagtgattcatat 2111477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 36504935 - 36504873
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatc 304  Q
    |||||||||||| ||||| |||||||| || |||| ||||||| |||||||| ||||||||||    
T  36504935 ttttaattggttcatcgagaaacaattctagtgatgcatatctaaaattgaaccatatacatc 36504873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 20179041 - 20179106
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctcc 307  Q
    |||||| ||||| ||| | ||||||||  |||||| ||||||| ||||||||||||||||||||||    
T  20179041 ttttaagtggttcatcaagaaacaattcaactgatacatatctaaaattgaatcatatacatctcc 20179106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 40614935 - 40614831
Alignment:
Q  243 tttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 342  Q
    ||||| ||||| ||||| |||||| | || ||||  |||||| |||||||| |||||||||||| | |||||||| |||| |  | ||||||||||||||    
T  40614935 tttaagtggttcatcgagaaacaactctaatgatgtatatctaaaattgaaccatatacatctctaatgaatttttacaatattgtctcacttttttacc 40614836  T
Q  343 attca 347  Q
     ||||    
T  40614835 tttca 40614831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 36172019 - 36172081
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 94  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  36172019 aatactatataatcataaaagtcgcaatttaca-aaaaataatacatgtgatcaaaataaaaaa 36172081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 35296524 - 35296463
Alignment:
Q  255 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattt 316  Q
    ||||| ||||||||||||| || ||||||| |||||||||| |||| ||||| | |||||||    
T  35296524 atcgagaaacaattatacttatgcatatctaaaattgaatcgtatatatctctactgaattt 35296463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 35433547 - 35433483
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaa 96  Q
    ||||||||||||| |||||| ||   ||||||| |||||||||||||| |||||||||| ||||||    
T  35433547 aatactatataatcataaaaatcgcgatttaca-aaaaataatacatgtgatcaaaataaaaaaaa 35433483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 47014259 - 47014227
Alignment:
Q  363 aggatacgtctatgtgaagtatcttataagtat 395  Q
    ||||||||||| |||||||||||||||||||||    
T  47014259 aggatacgtctttgtgaagtatcttataagtat 47014227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 94 - 303
Target Start/End: Complemental strand, 394425 - 394216
Alignment:
Q  94 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 193  Q
    ||||||||  |||||||| |||| |||||| |||| |||||||| ||||||||||||| ||||||| |||||||||| ||||| |||||||| | |||||    
T  394425 aaagttttcgtataaatcgtattatattttaattcttatgttatggtatcaacaaatggatcaatacaagaactcaaaacaaaatttgtttaatgttgat 394326  T
Q  194 tgattgaatctcctatctctcttcgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaa 293  Q
    |||||||||||||| | |||  |  ||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||    
T  394325 tgattgaatctcctctttcttgttactttcatccactaaaaacatgatttttaattggttaatcgaaaaaaaattatagtgattcatatcttaaatcgaa 394226  T
Q  294 tcatatacat 303  Q
    ||||||||||    
T  394225 tcatatacat 394216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 53854 - 53789
Alignment:
Q  31 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaa 96  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||||    
T  53854 aatactatataatcataaaagtcgcaatttacaaaaaaataatacatgtgatcaaaataaaaaaaa 53789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 8005 - 7919
Alignment:
Q  255 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    ||||| |||||||| || |||| ||||||| ||||||| ||||||||||||  | |||||||| ||||||  | |||||||||||||    
T  8005 atcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttac 7919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 6275 - 6176
Alignment:
Q  242 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 341  Q
    |||||| ||||| ||| |||||||||| || | || |||||||  |||||||||||||||||||| || |||| ||  |||||  | |||||||||||||    
T  6275 ttttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcacttttttac 6176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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