View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15792_high_8 (Length: 268)
Name: NF15792_high_8
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_high_8 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 6191728 - 6191460
Alignment:
| Q |
1 |
atcctaacaaataaaagtacatgttactattcttgatagaaatcatagatgagagtaaagtaaagataagtatatagaaaatgagaacaactaactagtc |
100 |
Q |
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| T |
6191728 |
atcctaacaaataaaagtacatgttactattcttgatagaaatcatagatgagagtaaagtaaagataagtatatagaaaatgagaacaactaactagtc |
6191629 |
T |
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| Q |
101 |
taactaattagtccaactaaccagtatgactgtatgactaacattgtatctaataaaaca-aatacagttataatttaattcctatagtacacccactcc |
199 |
Q |
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| T |
6191628 |
taactaattagtccaactaaccagtatgactgtatgactaacattgtatctaataaaacataatacagttataatttaattcctatagtacacccactcc |
6191529 |
T |
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| Q |
200 |
tcttgccttgagcccttgactaatgctttttcattgtgcagttcgaaagcaaaggaaatgaaggaagac |
268 |
Q |
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| T |
6191528 |
tcttgccttgagcccttgactaatgctttttcattgtgcagttcgaaagcaaaggaaatgaaggaagac |
6191460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 6184514 - 6184467
Alignment:
| Q |
221 |
aatgctttttcattgtgcagttcgaaagcaaaggaaatgaaggaagac |
268 |
Q |
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| T |
6184514 |
aatgctttttcattgtgcagttcaaaagcactggaaatgaaggaagac |
6184467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 37454084 - 37454139
Alignment:
| Q |
213 |
ccttgactaatgctttttcattgtgcagttcgaaagcaaaggaaatgaaggaagac |
268 |
Q |
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| T |
37454084 |
ccttgaccaattctttttcattgtgtagttagaaagcaaaggaattgaaggaagac |
37454139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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