View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15792_high_9 (Length: 239)
Name: NF15792_high_9
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45343270 - 45343050
Alignment:
| Q |
1 |
tgactccttctcaacaagacttttataatttttgaaagttgtaaatgcttcagacttttcagcaagaaaataaatccacacttttctactaaagtcgtca |
100 |
Q |
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| T |
45343270 |
tgactccatctcaacaaggcttttataatttttgaaagttgtaaatgcttcagatttttcagcaagaaaataaatccacacttttctactaaagtcgtca |
45343171 |
T |
|
| Q |
101 |
ataaatgttataaagtaccttttgttgctattggagttgggagtaataggcccgcaaacatcagcatgtacaagctgcaatttttgggaagctctccatt |
200 |
Q |
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| T |
45343170 |
atgaatgttataaagtaccttttgttgctattggagttgggagtaataggcccgcaaatatcagcatgtacaagctgcaatttatgggaagctctccatt |
45343071 |
T |
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| Q |
201 |
gactcttctttggaatggcat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45343070 |
gactcttctttggaatggcat |
45343050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 48200705 - 48200498
Alignment:
| Q |
8 |
ttctcaacaagacttttataatttttgaaagttgtaaatgcttcagacttttcagcaagaaaataaatccacacttttctactaaagtcgtcaataaatg |
107 |
Q |
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| T |
48200705 |
ttctcaacaagacttttaaaatgtttaaaagtattgaatgcatcagatttctctaccaaaaaataaatccaaacttttcgagtaaagtcatcaataaaac |
48200606 |
T |
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| Q |
108 |
ttataaagtaccttttgttgctattggagttgggagtaataggcccgcaaacatcagcatgtacaagctgcaatttttgggaagctctccattgactctt |
207 |
Q |
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| T |
48200605 |
tgattaagtaccttttgctgccatttgatatgggagtgatcggaccgcacaagtcagcatgaattagttgaagcttttgtgatgctctccaatgactttt |
48200506 |
T |
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| Q |
208 |
ctttggaa |
215 |
Q |
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|||||||| |
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| T |
48200505 |
ctttggaa |
48200498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 48209288 - 48209172
Alignment:
| Q |
8 |
ttctcaacaagacttttataatttttgaaagttgtaaatgcttcagacttttcagcaagaaaataaatccacacttttctactaaagtcgtcaataaatg |
107 |
Q |
| |
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|||||||||||||||||| ||| ||| ||||| | ||||| ||||| || || | | |||||||||||| ||||||| | ||||||| |||||||| |
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| T |
48209288 |
ttctcaacaagacttttaaaatgtttaaaagtattgaatgcatcagatttctctaccaaaaaataaatccaaacttttcgagtaaagtcatcaataaaac |
48209189 |
T |
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| Q |
108 |
ttataaagtaccttttg |
124 |
Q |
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| || |||||||||||| |
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| T |
48209188 |
tgattaagtaccttttg |
48209172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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