View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15792_low_11 (Length: 324)
Name: NF15792_low_11
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 14201098 - 14201402
Alignment:
| Q |
1 |
atctttaactgtgattgtggtgatgcagtacgatcatattcttcgattagattgatgagatcttcgtcggaggtgatggaaaccaaagcgtcgaggtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14201098 |
atctttaactgtgattgtggtgatgcagtacgatcatattcttcgattagattgatgagatcttcgtcggaggtgatggaaaccaaagcgtcgaggtctt |
14201197 |
T |
|
| Q |
101 |
cagcgggtaactgacagcgaagttgcgttacggatgaactgcagagctctttcagcttcaataacagttctgtaacaaaaacagcttcaaaatcaatttc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14201198 |
cagcaggtaactgacagcgaagttgcgttacggatgaactgcagagctctttcagcttcaataacagttctgtaacaaaaacagcttcaaaatcaatttc |
14201297 |
T |
|
| Q |
201 |
aaattgaactaattattgtaactaactattacatctaataatactgaccggagaattgtatagagcgatcaacggagagaacgcgattatggccaccgag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14201298 |
aaattgaactaattattgtaactaactattacatctaataatactgaccggagaattgtatagagcgatcaacggagagaacgcgattatggccaccgag |
14201397 |
T |
|
| Q |
301 |
gtaac |
305 |
Q |
| |
|
||||| |
|
|
| T |
14201398 |
gtaac |
14201402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 37701778 - 37701816
Alignment:
| Q |
207 |
aactaattattgtaactaactattacatctaataatact |
245 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37701778 |
aactaattattgtaactaactattacaactaataatact |
37701816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 29051322 - 29051289
Alignment:
| Q |
207 |
aactaattattgtaactaactattacatctaata |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29051322 |
aactaattattgtaactaactattacatctaata |
29051289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 3997247 - 3997280
Alignment:
| Q |
207 |
aactaattattgtaactaactattacatctaata |
240 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
3997247 |
aactaattattgtaactaactgttacatctaata |
3997280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 37864134 - 37864101
Alignment:
| Q |
207 |
aactaattattgtaactaactattacatctaata |
240 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
37864134 |
aactaattattgtaaccaactattacatctaata |
37864101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 3320688 - 3320660
Alignment:
| Q |
208 |
actaattattgtaactaactattacatct |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3320688 |
actaattattgtaactaactattacatct |
3320660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 42603678 - 42603706
Alignment:
| Q |
213 |
ttattgtaactaactattacatctaataa |
241 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42603678 |
ttattgtaactaactattacatctaataa |
42603706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University