View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15792_low_12 (Length: 275)
Name: NF15792_low_12
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 147 - 254
Target Start/End: Original strand, 35682336 - 35682443
Alignment:
| Q |
147 |
actccaatctaattgaaacttacatgccaaactttgtaggatttgcttgtaattgtgtgcccggtaaaggtatttgttttttctttttattgggatttat |
246 |
Q |
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| T |
35682336 |
actccaatctaattgaaacttacataccaaactttgtaggatttgcttgtaattgtgtgcccggtagaggtatttgttttttctttttattgggatttat |
35682435 |
T |
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| Q |
247 |
tttaagac |
254 |
Q |
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| T |
35682436 |
tttaagac |
35682443 |
T |
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Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 35682060 - 35682155
Alignment:
| Q |
2 |
catcaaaccatacaatatcctactctttttatataccttccctagacttagagtggatataaaatgctcaaaaggaataaggcctttgttatatat |
97 |
Q |
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| T |
35682060 |
catcaaaccatacaatatcctactctttttatataccttccctagacttagagtggatataaaatgctcaaaaggaataaggcctttgttatatat |
35682155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 35682315 - 35682347
Alignment:
| Q |
89 |
gttatatatcgagctgtttatactccaatctaa |
121 |
Q |
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| T |
35682315 |
gttatatatcgtgctgtttatactccaatctaa |
35682347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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