View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15792_low_2 (Length: 503)
Name: NF15792_low_2
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 12646313 - 12646789
Alignment:
| Q |
18 |
acttgttccgcactaatttcatatccaaacataatgaggaagaagacagcacgaatcttatcctaaattacaacactccgtgcacattttacggtgagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||| |||||| ||||||||||| |||||||| |
|
|
| T |
12646313 |
acttgttccgcactaatttcatatccaaacataatgaggaagaagacaacaagaatcttctcctagattacgacactctgtgcacattttccggtgagag |
12646412 |
T |
|
| Q |
118 |
ttttgagaatagagtcagattagagttgctacctcctcttcattttcaacgagagggttgtccatttgttcgttgttggtgttcagctagtgttaatggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12646413 |
ttttgagaatagagtcagattagagttgccacctcctcttcattttcaacgagagggttgtccatttgttcgttgttggtgttcagctagtgttaatggc |
12646512 |
T |
|
| Q |
218 |
attctttgtctctctcaaggttttcttgaccc-atgaccattgtattgtggaatccagccactggggaatttaagattgttccttgtagccatcgaccat |
316 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12646513 |
attctttgtctctctcaaggttttattgaccccatgaccattgtattgtggaatccagccaacggggaatttaagattgttccttgtagccatcgaccat |
12646612 |
T |
|
| Q |
317 |
ataagtacattgagtttaatactcaaccttattcatttggttatgatcgtgttagagatgactataagattattcgaattattagttttcacatattttt |
416 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
12646613 |
ataagaacattgagtttaatactcaaccttattcatttggttatgatcgtgttagagatgactataagattattcgaatggttaattttcacatattttt |
12646712 |
T |
|
| Q |
417 |
tgaaggtgcttgggtaattttgccagagaagaatagccctttctgggagatggacttggattttgacgatgatgatg |
493 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12646713 |
tgaaggtgcttgggtttttttgccagagaagaatagccctttctgggagatggacttggattttgacgatgatgatg |
12646789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 12651445 - 12651921
Alignment:
| Q |
18 |
acttgttccgcactaatttcatatccaaacataatgaggaagaagacagcacgaatcttatcctaaattacaacactccgtgcacattttacggtgagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||| || ||||| |
|
|
| T |
12651445 |
acttgttccgcactaatttcatatccaaacataatgaggaagaagacaacacgaatcttatcctaaattacgacactctttgcacattttccgatgagag |
12651544 |
T |
|
| Q |
118 |
ttttgagaatagagtcagattagagttgctacctcctcttcattttcaacgagagggttgtccatttgttcgttgttggtgttcagctagtgttaatggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12651545 |
ttttgagaatagagtcagattagagttgccacatcctcttcattttcaacgagagggttgtccatttgttcgttgttggtgttcagctagtgttaatggc |
12651644 |
T |
|
| Q |
218 |
attctttgtctctctcaaggttttcttga-cccatgaccattgtattgtggaatccagccactggggaatttaagattgttccttgtagcc--atcgacc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12651645 |
attctttgtctctctcaaggttttcttgaccccatgaccattgtattgtggaatccagccaccggggaatttaagattgttccttgtagccatatcgacc |
12651744 |
T |
|
| Q |
315 |
atataagtacattgagtttaatactcaaccttattcatttggttatgatcgtgttagagatgactataagattattcgaattattagttttcacatattt |
414 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
12651745 |
atataaatacattgagtttaatactcaaccttattcatttggttatgatcgtgttaaggatgaccataagattattcgaattattagttttcac--attt |
12651842 |
T |
|
| Q |
415 |
tttgaaggtgcttgggtaattttgccagagaagaatagccctttctgggagatggacttggattttgacgatgatgatg |
493 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
12651843 |
tttgaaggtgcatggataattttgccagagatgaatagccctttctgggagatggacttggaatttgatgataatgatg |
12651921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 12724335 - 12724418
Alignment:
| Q |
253 |
accattgtattgtggaatccagccactggggaatttaagattgttccttgtagccatcgaccatataagtacattgagtttaat |
336 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||||||| |||||||| || ||| || |||||||||||||| |
|
|
| T |
12724335 |
accattgtattgtggaatccagccaccgaggaatttaaggttgttcctcatagccatcagccgtatgagaacattgagtttaat |
12724418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 4027483 - 4027522
Alignment:
| Q |
351 |
atttggttatgatcgtgttagagatgactataagattatt |
390 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4027483 |
atttggttatgaccgtgttagagatgactataagattatt |
4027522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 6117394 - 6117428
Alignment:
| Q |
350 |
catttggttatgatcgtgttagagatgactataag |
384 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6117394 |
catttggttatgatcgtgttagatatgactataag |
6117428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 12712332 - 12712299
Alignment:
| Q |
350 |
catttggttatgatcgtgttagagatgactataa |
383 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
12712332 |
catttggttatgatcgtgttagacatgactataa |
12712299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 14682436 - 14682403
Alignment:
| Q |
351 |
atttggttatgatcgtgttagagatgactataag |
384 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
14682436 |
atttggttatgatcgtgttagagatgattataag |
14682403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 30651138 - 30651177
Alignment:
| Q |
351 |
atttggttatgatcgtgttagagatgactataagattatt |
390 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
30651138 |
atttggttatgaccatgttagagatgactataagattatt |
30651177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 31777484 - 31777523
Alignment:
| Q |
351 |
atttggttatgatcgtgttagagatgactataagattatt |
390 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
31777484 |
atttggttatgaccatgttagagatgactataagattatt |
31777523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 29352951 - 29352912
Alignment:
| Q |
351 |
atttggttatgatcgtgttagagatgactataagattatt |
390 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29352951 |
atttggttatgactgtgttagagatgactataagattatt |
29352912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 34324907 - 34324946
Alignment:
| Q |
351 |
atttggttatgatcgtgttagagatgactataagattatt |
390 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
34324907 |
atttggttatgaccatgttagagatgactataagattatt |
34324946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University