View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15792_low_3 (Length: 493)
Name: NF15792_low_3
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 31104263 - 31103786
Alignment:
| Q |
1 |
gactaggttattattatatatata--caatagagtatttcaacgacttaatgaagttgccctagtttgatcgtgtgaaattgattttccaaaggtgattt |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31104263 |
gactaggttattattatatatatatacaatagagtatttcaacgacttaatgaagttgccctagtttgatcgtgtgaaattgattttccaaaggtgattt |
31104164 |
T |
|
| Q |
99 |
tcctgctccaagcatcttacatacttgatccatagttggacgagaacgtggaacttgatttaagcaagaaaatgccaactttgcaatcaagataacctcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31104163 |
tcctgctccaagcatcttacatacttgatccatagttggacgagaacgtggaacttgatttaagcaagaaaatgccaactttgcaatcaagataacctcc |
31104064 |
T |
|
| Q |
199 |
tcatcaattggttttataactttttgaggtctttgatctaaaacctctgtcaataacatatcattagccgttggtcttgtagatggtgacaaaaataatg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31104063 |
tcatcaattggttttataactttttgaggtctttgatctaaaacctctgtcaataacatatcattagccgttggtcttgtagatggtgacaaaaataatg |
31103964 |
T |
|
| Q |
299 |
aaatgagatctcctggatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctcattcacttccattgtttgggacaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31103963 |
aaatgagatctcctggatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctcattcacttccattgtttgggacaa |
31103864 |
T |
|
| Q |
399 |
ctctgcaaacaaacaaattaattaatttttaagttatattttgcacaaaacaatatgaagccatgtattctttaaatg |
476 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31103863 |
ctctgcaaacaaacaaataaattaatttttaagttatattttgcacaaaacaatatgaagccatgtattctttaaatg |
31103786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 31185229 - 31184832
Alignment:
| Q |
17 |
tatatatacaatagagtatttcaacgacttaatgaag---ttgccctagtttgatcgtgtgaaattgattttccaaaggtgattttcctgctccaagcat |
113 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| ||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
31185229 |
tatatatacaatagagtatttcaatgagttaatgaagaagttgtcctagtttgatagtgtgaagttgatcttccaaaggtgattttcctgctccaagcat |
31185130 |
T |
|
| Q |
114 |
cttacatacttgatccatagttggacgagaacgtggaacttgatttaagcaagaaaatgccaactttgcaatcaagataacctcctcatcaattggtttt |
213 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||| || |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31185129 |
cttacatacttgatccatggttggccgagagcgtggctctggatttatgcaagaaaatgctaactttgcaatcaagataacctcctcatcaattggtttc |
31185030 |
T |
|
| Q |
214 |
ataactttttgaggtctttgatctaaaacctctgtcaataacatatcattagccgttggtcttgtagatggtgacaaaaataatgaaatgagatctcctg |
313 |
Q |
| |
|
||||||| ||||||||||||||||||||| | || |||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
31185029 |
ataacttcttgaggtctttgatctaaaacatttgccaataatgtatcattagccaatgtccttgtagatggtgacaaatataatgaaatgagatctccag |
31184930 |
T |
|
| Q |
314 |
gatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctcattcacttccattgtttgggacaactctgcaaacaaa |
411 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||| ||||||||| | ||||||| |||||||| |
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|
| T |
31184929 |
gatgttctccctttatgatttccaaagcaagtactccaaaactgtagacatcacatttctcattcactttcattgtttgtgccaactctacaaacaaa |
31184832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 86 - 416
Target Start/End: Complemental strand, 31059612 - 31059282
Alignment:
| Q |
86 |
ccaaaggtgattttcctgctccaagcatcttacatacttgatccatagttggacgagaacgtggaacttgatttaagcaagaaaatgccaactttgcaat |
185 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||| |||| |||| || |||||||| |||| | ||||||| |||||||||| ||||||| |
|
|
| T |
31059612 |
ccaaaggtgattttcctattgcaagcatcttacaaacttgacccatgcttggtcgtaaacgtggattttgactcaagcaagcaaatgccaaccttgcaat |
31059513 |
T |
|
| Q |
186 |
caagataacctcctcatcaattggttttataactttttgaggtctttgatctaaaacctctgtcaataacatatcattagccgttggtcttgtagatggt |
285 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||| || ||||||| |||||| | ||||| ||||| ||| |
|
|
| T |
31059512 |
caagataacctcctcatcaattggttccattacttgttgaggtctttgatctaaaacatctgttaacaacatattgttagccatcggtctcgtagaaggt |
31059413 |
T |
|
| Q |
286 |
gacaaaaataatgaaatgagatctcctggatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctcattcacttcca |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
31059412 |
gacaaaaataatgaaatgagatctcctggatgttttcccattatggtttccaaagcaagtactccaaaactgtatacatcacatttctcattcacttcca |
31059313 |
T |
|
| Q |
386 |
ttgtttgggacaactctgcaaacaaacaaat |
416 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |
|
|
| T |
31059312 |
ttgtttgtgccaactctgcaaacaaacaaat |
31059282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 51 - 416
Target Start/End: Complemental strand, 31141650 - 31141282
Alignment:
| Q |
51 |
aagttgccctagtttgatcgtgtgaaattgattt---tccaaaggtgattttcctgctccaagcatcttacatacttgatccatagttggacgagaacgt |
147 |
Q |
| |
|
||||||||||||| ||||| |||||| ||| || ||||||||||||||||| | ||||||| ||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
31141650 |
aagttgccctagtctgatcatgtgaagttgcattcccaccaaaggtgattttcctattgcaagcattttagatacttgatccatggttggtcgagaacgt |
31141551 |
T |
|
| Q |
148 |
ggaacttgatttaagcaagaaaatgccaactttgcaatcaagataacctcctcatcaattggttttataactttttgaggtctttgatctaaaacctctg |
247 |
Q |
| |
|
||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||| ||| |
|
|
| T |
31141550 |
ggattttgattcaagcaagcaaatgccaaccttgcaatcaagataacctcctcatcaactggtttcataacatgttgaggtctttgatctaaaacatcta |
31141451 |
T |
|
| Q |
248 |
tcaataacatatcattagccgttggtcttgtagatggtgacaaaaataatgaaatgagatctcctggatgttttcctattatgatttccaaagcaagcac |
347 |
Q |
| |
|
|||| ||||||| ||||||| || | ||||||||| |||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| || |
|
|
| T |
31141450 |
tcaacaacatattattagccattagccttgtagattgtgataaaaataatgaaatgagatctccaggatgctttcctactatgatttccaaagcaagtac |
31141351 |
T |
|
| Q |
348 |
tccgaagctgtatacatcacatttctcattcacttccattgtttgggacaactctgcaaacaaacaaat |
416 |
Q |
| |
|
||| || |||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||| |
|
|
| T |
31141350 |
tccaaaactgtatacatcacatttctcattcacctccattgtttgagccaactctgcaacaaaacaaat |
31141282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 86 - 416
Target Start/End: Complemental strand, 31160430 - 31160100
Alignment:
| Q |
86 |
ccaaaggtgattttcctgctccaagcatcttacatacttgatccatagttggacgagaacgtggaacttgatttaagcaagaaaatgccaactttgcaat |
185 |
Q |
| |
|
||||||||||||||||| | ||||||| ||| ||||||||||||| ||||| |||||||||||| |||||| ||||||| |||||||||| ||||||| |
|
|
| T |
31160430 |
ccaaaggtgattttcctattgcaagcattttagatacttgatccatggttggtcgagaacgtggattttgattcaagcaagcaaatgccaaccttgcaat |
31160331 |
T |
|
| Q |
186 |
caagataacctcctcatcaattggttttataactttttgaggtctttgatctaaaacctctgtcaataacatatcattagccgttggtcttgtagatggt |
285 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||| ||| |||| ||||||| ||||||| || | ||||||||| || |
|
|
| T |
31160330 |
caagataacctcctcatcaactggtttcataacatgttgaggtctttgatctaaaacatctatcaacaacatattattagccattagccttgtagattgt |
31160231 |
T |
|
| Q |
286 |
gacaaaaataatgaaatgagatctcctggatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctcattcacttcca |
385 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
31160230 |
gataaaaataatgaaatgagatctccaggatgctttcctactatgatttccaaagcaagtactccaaaactatatacatcacatttctcattcacctcca |
31160131 |
T |
|
| Q |
386 |
ttgtttgggacaactctgcaaacaaacaaat |
416 |
Q |
| |
|
||||||| | ||||||||||| |||||||| |
|
|
| T |
31160130 |
ttgtttgagccaactctgcaacaaaacaaat |
31160100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 86 - 416
Target Start/End: Complemental strand, 31242533 - 31242203
Alignment:
| Q |
86 |
ccaaaggtgattttcctgctccaagcatcttacatacttgatccatagttggacgagaacgtggaacttgatttaagcaagaaaatgccaactttgcaat |
185 |
Q |
| |
|
||||||||||||||||| | ||||||| ||| ||||||||||||| ||||| |||||||||||| |||||| ||||||| |||||||||| ||||||| |
|
|
| T |
31242533 |
ccaaaggtgattttcctattgcaagcattttagatacttgatccatggttggtcgagaacgtggattttgattcaagcaagcaaatgccaaccttgcaat |
31242434 |
T |
|
| Q |
186 |
caagataacctcctcatcaattggttttataactttttgaggtctttgatctaaaacctctgtcaataacatatcattagccgttggtcttgtagatggt |
285 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||| ||| |||| ||||||| ||||||| || | ||||||||| || |
|
|
| T |
31242433 |
caagataacctcctcatcaactggtttcataacatgttgaggtctttgatctaaaacatctatcaacaacatattattagccattagccttgtagattgt |
31242334 |
T |
|
| Q |
286 |
gacaaaaataatgaaatgagatctcctggatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctcattcacttcca |
385 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
31242333 |
gataaaaataatgaaatgagatctccaggatgctttcctactatgatttccaaagcaagtactccaaaactatatacatcacatttctcattcacctcca |
31242234 |
T |
|
| Q |
386 |
ttgtttgggacaactctgcaaacaaacaaat |
416 |
Q |
| |
|
||||||| | ||||||||||| |||||||| |
|
|
| T |
31242233 |
ttgtttgagccaactctgcaacaaaacaaat |
31242203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 2301786 - 2301853
Alignment:
| Q |
307 |
tctcctggatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctc |
374 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| | ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
2301786 |
tctccaggatgctttcccattataatttcaagagcaaccactccaaagctgtatacatcacatttctc |
2301853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 411
Target Start/End: Complemental strand, 31216928 - 31216793
Alignment:
| Q |
276 |
tgtagatggtgacaaaaataatgaaatgagatctcctggatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctca |
375 |
Q |
| |
|
|||||||| ||| || ||| | ||||||| |||| ||||||| ||||| | | |||||| ||| ||| |||||||||||||| |||||||| ||||| |
|
|
| T |
31216928 |
tgtagatgatgagaacaatgaggaaatgaaatctgctggatgctttcccagaaggatttcaaaacaaagaactccgaagctgtaaacatcacacttctcg |
31216829 |
T |
|
| Q |
376 |
ttcacttccattgtttgggacaactctgcaaacaaa |
411 |
Q |
| |
|
|||||||||| || |||| |||||| ||| |||| |
|
|
| T |
31216828 |
gtcacttccatagtctgggcaaactctacaatcaaa |
31216793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 17849732 - 17849674
Alignment:
| Q |
331 |
atttccaaagcaagcactccgaagctgtatacatcacatttctcattcacttccattgt |
389 |
Q |
| |
|
|||||||| || | ||||||||| || ||||||||||| ||||||||||||| |||||| |
|
|
| T |
17849732 |
atttccaatgccaacactccgaaactatatacatcacacttctcattcactttcattgt |
17849674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 37027997 - 37027912
Alignment:
| Q |
299 |
aaatgagatctcctggatgttttcctattatgatttccaaagcaagcactccgaagctgtatacatcacatttctcattcacttcc |
384 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||| ||||||||| | |||||| || || | ||||||||||| |||||||||||| |
|
|
| T |
37027997 |
aaataagatcccctggatgttttcccattattatttccaaacataacactccaaaactaaacacatcacatttttcattcacttcc |
37027912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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