View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15792_low_4 (Length: 463)

Name: NF15792_low_4
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15792_low_4
NF15792_low_4
[»] scaffold0277 (2 HSPs)
scaffold0277 (149-263)||(5562-5665)
scaffold0277 (154-261)||(14082-14178)
[»] chr6 (11 HSPs)
chr6 (154-261)||(28780780-28780876)
chr6 (213-263)||(27228478-27228528)
chr6 (222-263)||(27594029-27594070)
chr6 (219-263)||(27532569-27532613)
chr6 (150-256)||(26720073-26720177)
chr6 (149-207)||(26801694-26801752)
chr6 (149-263)||(27585549-27585662)
chr6 (219-263)||(27699249-27699293)
chr6 (219-263)||(27719499-27719543)
chr6 (219-263)||(27725719-27725763)
chr6 (166-263)||(27581746-27581841)
[»] chr4 (1 HSPs)
chr4 (149-208)||(18683775-18683833)
[»] scaffold0349 (2 HSPs)
scaffold0349 (219-263)||(4295-4339)
scaffold0349 (219-263)||(8921-8965)


Alignment Details
Target: scaffold0277 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 5562 - 5665
Alignment:
Q  149 acacttttaccaagtgggaaacttccttcgcatttcctatcttctgtaaagtgaccatcagtaatttcctacatccttcttccatgtaatttctttaaag 248  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||            |||||||||||||||||||||||||||||    
T  5562 acacttttaccaagtgggaaacttccttctcatttcctatcttctgtaaagcaaccatc-----------tcatccttcttccatgtaatttctttaaag 5650  T
Q  249 cagtgtgaatgtctt 263  Q
    || ||| ||||||||    
T  5651 caatgtcaatgtctt 5665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 14082 - 14178
Alignment:
Q  154 tttaccaagtgggaaacttccttcgcatttcctatcttctgtaaagtgaccatcagtaatttcctacatccttcttccatgtaatttctttaaagcagtg 253  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||||||            ||||||||||||||||||||||||||||||| |     
T  14082 tttaccaagtgggaaacttccttctcatttcctatcttctgtaaagcaaccatc-----------tcatccttcttccatgtaatttctttaaagcaata 14170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 28780876 - 28780780
Alignment:
Q  154 tttaccaagtgggaaacttccttcgcatttcctatcttctgtaaagtgaccatcagtaatttcctacatccttcttccatgtaatttctttaaagcagtg 253  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||||||            ||||||||||||||||||||||||||||||| |     
T  28780876 tttaccaagtgggaaacttccttctcatttcctatcttctgtaaagcaaccatc-----------tcatccttcttccatgtaatttctttaaagcaata 28780788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 27228528 - 27228478
Alignment:
Q  213 tttcctacatccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  27228528 tttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 27228478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 27594029 - 27594070
Alignment:
Q  222 tccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27594029 tccttcttccatgtaatttctttaaagcaatgtgaatgtctt 27594070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 27532569 - 27532613
Alignment:
Q  219 acatccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  27532569 acatccttcttccatgtaatttctttaaagcaacgtgaatgtctt 27532613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 26720177 - 26720073
Alignment:
Q  150 cacttttaccaagtgggaaacttccttcgcatttcctatcttctgtaaagtgaccatcagtaatttcctacatccttcttccatgtaatttctttaaagc 249  Q
    |||||||||||||| ||||||||||||| ||||| ||||| |||||||| | |||| || |  ||| |||| | ||  ||||||||||||||| ||||||    
T  26720177 cacttttaccaagttggaaacttccttctcattttctatcctctgtaaaataaccaccact--tttgctacctgctctttccatgtaatttctgtaaagc 26720080  T
Q  250 agtgtga 256  Q
    | |||||    
T  26720079 aatgtga 26720073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 26801752 - 26801694
Alignment:
Q  149 acacttttaccaagtgggaaacttccttcgcatttcctatcttctgtaaagtgaccatc 207  Q
    |||||||| |||||| ||||||||| ||| ||||||||||||| |||||||| ||||||    
T  26801752 acactttttccaagttggaaacttctttcccatttcctatcttatgtaaagtaaccatc 26801694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 27585549 - 27585662
Alignment:
Q  149 acacttttaccaagtgggaaacttccttcgcatttcctatcttctgtaaagtgacc--atcagtaatttcctacatccttcttccatgtaatttctttaa 246  Q
    |||||| || ||||||||||||||||||| |||||| ||| | ||||||||| ||   |||| |  || |||||||| |||||| |||||||||||| ||    
T  27585549 acacttgtagcaagtgggaaacttccttcccatttcatatgt-ctgtaaagtaacactatcact--ttccctacatctttcttctatgtaatttcttaaa 27585645  T
Q  247 agcagtgtgaatgtctt 263  Q
    |||| ||||||||||||    
T  27585646 agcaatgtgaatgtctt 27585662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 27699249 - 27699293
Alignment:
Q  219 acatccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||    
T  27699249 acatccttcttccatgtaatttctttagagcaatgtcaatgtctt 27699293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 27719499 - 27719543
Alignment:
Q  219 acatccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||||    
T  27719499 acatccttcttccatgtaatttcgttaaagcaatgtcaatgtctt 27719543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 27725719 - 27725763
Alignment:
Q  219 acatccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||    
T  27725719 acatccttcttccatgtaatttctttagagcaatgtcaatgtctt 27725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 27581746 - 27581841
Alignment:
Q  166 gaaacttccttcgcatttcctatcttctgtaaagtgaccatcagtaatttcctacatccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||  |||||||||||||| || | | ||||||| |  ||| |||| ||||  ||||||||||| ||| ||||||| ||||||||||||    
T  27581746 gaaacttccttcctatttcctatcttctatacaataaccatcact--ttttctacctcctctttccatgtaatgtctgtaaagcaatgtgaatgtctt 27581841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 18683775 - 18683833
Alignment:
Q  149 acacttttaccaagtgggaaacttccttcgcatttcctatcttctgtaaagtgaccatca 208  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||||| ||||| |||||||    
T  18683775 acacttttaccaagtgggaaacttccttcccatttcgtat-ttctgcaaagtaaccatca 18683833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 4295 - 4339
Alignment:
Q  219 acatccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||    
T  4295 acatccttcttccatgtaatttctttagagcaatgtcaatgtctt 4339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 8921 - 8965
Alignment:
Q  219 acatccttcttccatgtaatttctttaaagcagtgtgaatgtctt 263  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||||    
T  8921 acatccttcttccatgtaatttcgttaaagcaatgtcaatgtctt 8965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University