View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15792_low_6 (Length: 438)
Name: NF15792_low_6
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 32815605 - 32816003
Alignment:
| Q |
18 |
aataccaatctctaagtcatgccatggatgagcagcagcatctttcttatcagccatggaagaaagtattctttcattcaacgcaacaactggaggcaac |
117 |
Q |
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| T |
32815605 |
aataccaatctctaagtcatgccatggatgagcagcagcatctttcttatcagccatggaagaaagtattctttcattcaacgcaacaactggaggcaac |
32815704 |
T |
|
| Q |
118 |
tcaattttagcagtagaagaagaatgagttgcnnnnnnngattcttgttcattgttgttattggtagccatttttacttgatgatgatttctgagctaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815705 |
tcaattttagcagtagaagaagaatgagttgctttttttgattcttgttcattgttgttattggtagccatttttacttgatgatgatttctgagctaaa |
32815804 |
T |
|
| Q |
218 |
acatgtaaaattggaaacgtcaatgatgaataagtctttattaaacaacaagttatggtaaatgaagaagaagatattgtaacaaaccgaagaaaatgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
32815805 |
acatgtaaaattggaaacgtcaatgatgaatatgtctttattaaacaacaagttatggtaaatgaagaagaagatatcgtaacaaaccaaagaaaatgaa |
32815904 |
T |
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| Q |
318 |
tggaggttgagaaatgtgatatgtgactgagaggaacgttactgagaatgagatagtgaagttacggaatagaatgaatgaaactactgtgtaactgtg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32815905 |
tggaggttgagaaatgtgatatgtgactgagaggaacgttactgagaattagatagtgaagtaacggaatagaatgaatgaaactactgtgtaactgtg |
32816003 |
T |
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