View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15792_low_8 (Length: 393)
Name: NF15792_low_8
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 173 - 377
Target Start/End: Original strand, 5301966 - 5302170
Alignment:
| Q |
173 |
atttcgtctgataaaatttataattttaccttcaaactgcattttatattttaatttattgttcaattcttttcacattaggtaaaaccaaactttctat |
272 |
Q |
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| T |
5301966 |
atttcgtccgataaaatttataattttaccttcaaactgcattttatattttaatttattgttcaattattttcacattaagtaaaaccaaactttctgt |
5302065 |
T |
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| Q |
273 |
cctacatagatcattttttctctcaattcaattttacaaaattaattatcgtcaggctgaaaccaaacaaacattagagtttaaatctcattgccatact |
372 |
Q |
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| T |
5302066 |
cctacatagatcattttttctctcaattcaattttacaaaattaattatcgtcacgctgaaaccaaacaaacattagagtttaaaactcattgccatact |
5302165 |
T |
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| Q |
373 |
ttcat |
377 |
Q |
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||||| |
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| T |
5302166 |
ttcat |
5302170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 5301791 - 5301856
Alignment:
| Q |
55 |
acttgtttaatagtttgttttgtgttaattgttaaggctttgaggaatgtcttggacactttcttt |
120 |
Q |
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| T |
5301791 |
acttgtttattagtttgttttatgttaattgttaaggctttgaggaatgtcttggacactttcttt |
5301856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 5301670 - 5301703
Alignment:
| Q |
20 |
atcaatctgtcatggctcgaccctcatccttaac |
53 |
Q |
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| T |
5301670 |
atcaatctgtcatggctcgaccctcatccttaac |
5301703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 30085485 - 30085434
Alignment:
| Q |
126 |
tcacattttggaaatggataccacataaagtagtgaaatccacatgaatttc |
177 |
Q |
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| T |
30085485 |
tcacatgttggaaatggatcccacataaagtggtgagatccacatgagtttc |
30085434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 4568932 - 4568892
Alignment:
| Q |
150 |
ataaagtagtgaaatccacatgaatttcgtctgataaaatt |
190 |
Q |
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| T |
4568932 |
ataaagtggtgaaatccaaatgaatttcgtcttataaaatt |
4568892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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