View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15792_low_9 (Length: 351)
Name: NF15792_low_9
Description: NF15792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15792_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 27 - 239
Target Start/End: Original strand, 24567115 - 24567327
Alignment:
| Q |
27 |
agattattctatgatttatgggtagctttaagagtcaataaaagttcagctctaaatttaatgctgctctagtctaaagtttcatggctatcagcagtta |
126 |
Q |
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| T |
24567115 |
agattcttctatgatttatgggtagctttaagagtcaataaaagttcagctctaaatttaatgctgctctagtctaaagtttcatggctatcagcactta |
24567214 |
T |
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| Q |
127 |
cctatgcacattatttgtgaagaaaagtttatataaaagttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacga |
226 |
Q |
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| T |
24567215 |
cctatgcacattatttgtgaagaaaagtttatataaaagttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacga |
24567314 |
T |
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| Q |
227 |
ttgattcttcatg |
239 |
Q |
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||||||||||||| |
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| T |
24567315 |
ttgattcttcatg |
24567327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 24567369 - 24567421
Alignment:
| Q |
281 |
aatgcaaacatctagattctatctttactggtatagtaatatatggtgaggtg |
333 |
Q |
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| T |
24567369 |
aatgcaaacatctagattctatctttactggtatagtaatatatggtgaggtg |
24567421 |
T |
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