View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15793_high_2 (Length: 396)
Name: NF15793_high_2
Description: NF15793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15793_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 29132468 - 29132090
Alignment:
| Q |
18 |
ttcaaatcccaaatgaatcagaagaaacagatataagagatcaagcaggtagaggtttatattccttcccaattcgtttgttagatccaattaccaaaac |
117 |
Q |
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| T |
29132468 |
ttcaaatcccaaatgaatcagaagaaacagatataagacatcaagcaggtagaggtttatattccttcccaattcgtttgttagatccaatcaccaaaac |
29132369 |
T |
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| Q |
118 |
accagcttcttttcaaaccaccttttcttttcagcttaataatttaactactgcttctgatataagtgattatggtggtggtagtggacttactttcatc |
217 |
Q |
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| T |
29132368 |
accagcttcttttcaaaccaccttttcttttcagcttaataatttaactactgcttctgatataagtgattatggtggtggtagtggacttactttcatc |
29132269 |
T |
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| Q |
218 |
attgtacctgatgaattcactgttggaaggccaggaccttggcttggtatgcttaatgatgcttgcgagagcgattataaagctgttgcaattgagtttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29132268 |
attgtacctgatgaattcactgttggaaggccaggaccttggcttggtatgcttaatgatgcttgcgagagcgattataaagccgttgcaattgagtttg |
29132169 |
T |
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| Q |
318 |
atacacgagaaaatccagaattcggtgatccaaatgataaccatgttggtataaatttaggtagcatagtatctactaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29132168 |
atacacgagaaaatccagaattcggtgatccaaatgataaccatgttggtataaatttaggtagcatagtatctactaa |
29132090 |
T |
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