View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15793_high_3 (Length: 378)
Name: NF15793_high_3
Description: NF15793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15793_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 33 - 368
Target Start/End: Original strand, 49623367 - 49623700
Alignment:
| Q |
33 |
ctgagcattttttaccaaacaaacttgaacatcacaaattaacactttaaataactcttccaaaaaattagtgatatgtnnnnnnnggagggcaaactac |
132 |
Q |
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| T |
49623367 |
ctgagcattttttaccaaacaaacttgaacatcacaaattaacactttaaataactcttccaaaaaattagtgatatgtaaaaaaaga--ggcaaactac |
49623464 |
T |
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| Q |
133 |
tacaaaaactaacatgagaacattatatttgccaacaacaacaaaacaaagaaggtaacaacatataataacaccgggtcgtacttagatgaaaatgttc |
232 |
Q |
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| T |
49623465 |
tacaaaaactagcatgagaacatcgtatttgccaacaacaacaaaacaaagaaggtaacaacatataataacaccgggtcgtacttaaatgaaaatgttc |
49623564 |
T |
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| Q |
233 |
agtttatcagtattggcattgtcaattgagttaaacctttctgaccactattgatttattattttattcaaaattgcaacagaaatggtccaaatcatga |
332 |
Q |
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| T |
49623565 |
agtttattaatattggcattgtcaattgagttaaacctttctgaccacggttgatttattattttattcaaaattgcaacagaaatggtccaaatcatga |
49623664 |
T |
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| Q |
333 |
taacttgataaccaataatgccacactacacctatg |
368 |
Q |
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| T |
49623665 |
taacttgataaccaataatgccacactacacctatg |
49623700 |
T |
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